TABLE 2.
Primers used in this study
| Group | Number | Primer sequence (5′→3′) | Location (accession no.) |
|---|---|---|---|
| satABC | A.1 | CTATATGTTGTTCACGCATTC | 1505216-1505236 (AE007317) |
| A.2 | CATTATCAATTAAAAATCAAACGGTCATCCATCACTCTCCTCTGTa | 1504642-1504662 (AE007317) | |
| A.3 | GCATACCCTCCATTTTGTAGATCATCCATCACTCTCCTCTGTb | 1504642-1504662 (AE007317) | |
| A.4 | GGAAAGGGGCCCAGGTCTCTACAAAATGGAGGGTATGCc | 1501066-1501086 (AE007317) | |
| A.5 | TCTACAAAATGGAGGGTATGC | 1501066-1501086 (AE007317) | |
| A.6 | GAATGCTACTGCCTCGTCTTTGA | 1500702-1500724 (AE007317) | |
| A.7 | TTTGCAGGTCGTTTCTC | 1505403-1505419 (AE007317) | |
| A.8 | TATTCTCATTTCTCTACCTC | 1500451-1500470 (AE007317) | |
| A.9 | GCCTTTGAGGCGACAGC | 1652124-1652146 (AE007317) | |
| A.10 | ACACGATGCCCCACTTCTTTCTG | 1652408-1652433 (AE007317) | |
| SP1688-90 | B.1 | TGGTAATCGATTGTTTGGG | 1513786-1513804 (AE007317) |
| B.2 | CATTATCAATTAAAAATCAAACGGTTTTTCATCGTTCTTCTCTTTCa | 1513451-1513472 (AE007317) | |
| B.3 | CCTTCTTTCGTCTACTTCACAGTTTTTCATCGTTCTTCTCTTTCd | 1513451-1513472 (AE007317) | |
| B.4 | GGAAAGGGGCCCAGGTCCTGTGAAGTAGACGAAAGAAGGc | 1510314-1510335 (AE007317) | |
| B.5 | CTGTGAAGTAGACGAAAGAAGG | 1510314-1510335 (AE007317) | |
| B.6 | GAAGCTGGTCTAGAAAATAAATAA | 1509913-1509936 (AE007317) | |
| B.7 | GTTTAGGAACTTATGTGGGAGTA | 1513885-1513907 (AE007317) | |
| B.8 | GGATTTGATAAGGGAATAGTTGA | 1509625-1509647 (AE007317) | |
| B.9 | GTGTATTTTCAACTGCCTGTCC | 1509872-1509893 (AE007317) | |
| B.10 | ATGCGAATGAATTAAACTATGGTC | 1510202-1510225 (AE007317) | |
| SP1328 | C.1 | GCAACAATGCGTCAAAATCCTC | 1254113-1254134 (AE005672) |
| C.2 | CATTATCCATTAAAAATCAAACGGTAGATACCTGCAACCAACACa | 1253572-1253591 (AE005672) | |
| C.3 | AACTTGAATCCGCTTTAATTTCTAGATACCTGCAACCAACACe | 1253572-1253591 (AE005672) | |
| C.4 | AAGCATAAGGAAAGGGGCCCGAAATTAAAGCGGATTCAAGTTc | 1252127-1252148 (AE005672) | |
| C.5 | GAAATTAAAGCGGATTCAAGTT | 1252127-1252148 (AE005672) | |
| C.6 | TTCTTCAAAAGTCACCAACATA | 1251714-1251735 (AE005672) | |
| C.7 | CAGCTATCCCACCTATTTATTT | 1254259-1254280 (AE005672) | |
| C.8 | AGTTTTTTAACAGTTTCATCATT | 1251664-1251686 (AE005672) | |
| C.9 | GTGATTCTGATTAGTGGTGTC | 1253070-1253090 (AE005672) | |
| C.10 | ACAGCTGTTGGAGGAAGGA | 1252270-1252288 (AE005672) | |
| aroE | RT.F | TGCAGTTCARAAACATWTTCTAA | 1232187-1232203 (AE007317) |
| RT.R | TGCTAGCCCATCATATTCGTTTGTTG | 1231725-1231747 (AE007317) | |
| Janus | J.F | CCGTTTGATTTTTAATGGATAATG | 7-30 (AY334019) |
| J.R | GGGCCCCTTTCCTTATGCTT | 247511-247527 (AE005672) |
a
Underlining indicates reverse complement sequence of primer J.F.
b
Underlining indicates reverse complement sequence of primer A.5.
c
Underlining indicates reverse complement sequence of primer J.R.
d
Underlining indicates reverse complement sequence of primer B.5.
e
Underlining indicates reverse complement sequence of primer C.5.