TABLE 5.
virAG upregulates the B. pseudomallei T6SS-1 gene cluster and flanking genes
| Locus tag (gene) | Mean RPKMa |
|
|---|---|---|
| AI(pBHR2) | AI(pBHR2-virAG)b | |
| BPSS1493 | 0.7 | 5.8 |
| BPSS1494 (virG) | 0.3 | 99.0 |
| BPSS1495 (virA) | 0.03 | 6.6 |
| BPSS1496 | 0.0 | 47.1 |
| BPSS1497 | 0.7 | 116 |
| BPSS1498 (hcp1) | 1.4 | 728 |
| BPSS1499 | 0.03 | 51.1 |
| BPSS1500 | 0.01 | 49.3 |
| BPSS1501 | 0.0 | 36.7 |
| BPSS1502 (clpV1) | 0.01 | 13.3 |
| BPSS1503 (vgrG1) | 0.06 | 18.8 |
| BPSS1504 | 0.01 | 3.3 |
| BPSS1505 | 0.01 | 3.1 |
| BPSS1506 | 0.0 | 2.1 |
| BPSS1507 | 0.0 | 21.2 |
| BPSS1508 | 0.0 | 5.8 |
| BPSS1509 | 0.0 | 8.9 |
| BPSS1510 | 0.0 | 8.0 |
| BPSS1511 (icmF1) | 0.01 | 7.4 |
| BPSS1512 (tssM) | 0.9 | 13.2 |
| BPSS1513 | 0.4 | 7.9 |
| BPSS1514 (folE) | 27.9 | 80.7 |
| BPSS1515 | 2.9 | 16.7 |
a
Values are the mean RPKM for each gene from three biological replicates.
b
P values were <0.001 for all comparisons [AI(pBHR2) versus AI(pBHR2-virAG)].