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. 2011 Mar 30;6(3):e18380. doi: 10.1371/journal.pone.0018380

Table 1. PSAAP algorithm performance of predicted phenotypes using curated RET mutations.

PSAAP Prediction a MutPred Predictionb PolyPhen Predictionc PMut Predictiond SIFT Predictione
Sensitivity 0.938 0.767 0.597 0.783 0.816
Specificity 0.867 0.823 0.920 0.591 0.821
Precision 0.883 0.843 0.541 0.723 0.779
a

Primary Sequence Amino Acid Properties (PSAAP) algorithm.

b

Analyzed with default settings at http://mutdb.org/mutpred.

c

Analyzed with default settings at http://genetics.bwh.harvard.edu/pph.

d

Analyzed with default settings at http://mmb.pcb.ub.es/PMut.

e

Analyzed with default settings at http://sift.jcvi.org.