Table 1. PSAAP algorithm performance of predicted phenotypes using curated RET mutations.
PSAAP Prediction a | MutPred Predictionb | PolyPhen Predictionc | PMut Predictiond | SIFT Predictione | |
Sensitivity | 0.938 | 0.767 | 0.597 | 0.783 | 0.816 |
Specificity | 0.867 | 0.823 | 0.920 | 0.591 | 0.821 |
Precision | 0.883 | 0.843 | 0.541 | 0.723 | 0.779 |
Primary Sequence Amino Acid Properties (PSAAP) algorithm.
Analyzed with default settings at http://mutdb.org/mutpred.
Analyzed with default settings at http://genetics.bwh.harvard.edu/pph.
Analyzed with default settings at http://mmb.pcb.ub.es/PMut.
Analyzed with default settings at http://sift.jcvi.org.