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. 2011 Mar 31;6(3):e18093. doi: 10.1371/journal.pone.0018093

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Thompson et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Average alignment quality scores (CS) for each MSA program tested and for eachglobal alignment attribute:(A) CS versus NorMD, (B) CS versus the percentage of the alignment covered by the blocks, (C) CS versus mean sequence length, (D) CS versus the total number of sequences.(E) Pearson correlation coefficients of overall quality scores (CS) for each program with global alignment attributes (blue: positive correlation, red: negative correlation).