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. 2011 Feb 2;286(14):12670–12682. doi: 10.1074/jbc.M110.207563

TABLE 1.

Sequences of DNA oligomers used in this study

6FAM, or 6-carboxyfluorescein, is a fluorescent probe that is covalently attached to the 5′ end of DNA oligomers. The subscript indicates the length of the DNA oligomer. For a double-stranded DNA (dsDNA) oligomer, the sequence of the complementary strand is not shown.

FL-T17 6FAM-5′-TTTTTTTTTTTTTTTTT-3′
25-mer 5′-CACTGACCGTCTGACTGCGATCCGA-3′
39-mer 5′-TCGGATCGCAGTCAGATGGTAAGAGAGACGCATAGATGC-3′
45-mer 5′GCGAACTGTCGAGTCGGCATCCGGATCTAGGGTAACCGGTACTGC-3′
51-mer 5′TCGGATCGCAGTCAGATGGTAAGAGAGACGCATAGATGCTGAGTGAGAGAT-3′
63-mer 5′TCGGATCGCAGTCAGATGGTAAGAGAGACGCATAGATGCTGAGTGAGAGATGCTCAGGTACAG-3′
FL-dsDNA15 6FAM-5′-TCG GAT CGC AGT CAG-3′
dsDNA9 5′-TCG GAT CGC-3′
dsDNA11 5′-TCG GAT CGC AG-3′
dsDNA15 5′-TCG GAT CGC AGT CAG-3′
dsDNA19 5′-TCG GAT CGC AGT CAG ACG G-3′
dsDNA21 5′-TCG GAT CGC AGT CAG ACG GTC-3′
dsDNA23 5′-TCG GAT CGC AGT CAG ACG GTC AG-3′
dsDNA27 5′-TCG GAT CGC AGT CAG ACG GTC AGT GAC-3′