TABLE 1.

List of genes that are differentially expressed between NM and SSM, have NM/SSM-specific copy

Gene Symbol	Gene Expression	p-value*	Copy Number Status	Correlation†	p-value§
FGFR1OP	NM<SSM	0.001	DEL NM	0.94	0.005
SEC23IP	SSM<NM	0.01	DEL SSM	0.94	0.005
GALNT7	SSM>NM	0.009	AMP SSM	0.94	0.005
G3BP2	SSM<NM	0.02	DEL SSM	0.94	0.005
MTAP	SSM<NM	0.0003	DEL SSM	0.89	0.02
DIS3	SSM<NM	0.03	DEL SSM	0.83	0.04
ZNF668	NM<SSM	0.02	DEL NM	0.83	0.04
USO1	SSM<NM	0.04	DEL SSM	0.83	0.04

number alterations, and in which mRNA expression is significantly correlated with DNA copy number.

^*T-test, with Bonferroni correction for multiple comparisons.

^†Spearman’s rank correlation coefficient.

^§By Spearman’s rank.