Figure 2. MDS analysis in three dimension model recapitulated the pattern of Fst tree.

The 3D MDS showed that all four Malay populations are well separated into three different sub-clusters, although still remained in the same cluster and dimensional platform. They are far separated from three other group populations which are Yoruba, Indian (IN-DR and IN-WL) and Negrito (MY-JH and MY-KS) which are far more diversified than the modern Malays.