Table 11.8.2.
Most common encountered problems and likely solutions.
Problem | Potential solution |
---|---|
Bank path already exists | Supply bank-transact -f flag or delete existing bank |
Segmentation fault (memory error) | Sample down reads or increase system memory |
Input File not properly formatted | Refer to converter utility toAmos |
Few or no overlaps found | Decrease minimum overlap size |
Highly fragmented assembly | Increase error rate, trim reads, error correction, run Bambus 2.0 |