Table 6.
Assembly quality and parameters for different assemblers
| Datasets | Type | Assembler | N50 | N90 | MAX | #Seq | Parameters |
|---|---|---|---|---|---|---|---|
| SRR006331 | Contig | Velvet | 6229 | 1830 | 21166 | 288 | k = 23, cov_cutoff = auto |
| D-Velvet | 7411 | 1549 | 17986 | 282 | |||
| ABySS | 5644 | 1505 | 15951 | 334 | k = 24 | ||
| D-ABySS | 4789 | 1216 | 12090 | 371 | |||
| SRR016146 | Contig | Velvet | 34052 | 7754 | 112041 | 301 | k = 31, cov_cutoff = auto |
| D-Velvet | 34898 | 7754 | 134258 | 292 | |||
| ABySS | 34124 | 7758 | 112038 | 297 | k = 33 | ||
| D-ABySS | 34889 | 7916 | 134314 | 297 | |||
| SRR001665 | Contig | Velvet | 17900 | 4362 | 73058 | 601 | k = 29, cov_cutoff = auto |
| D-Velvet | 18484 | 4687 | 73058 | 586 | |||
| ABySS | 18161 | 4364 | 71243 | 603 | k = 30 | ||
| D-ABySS | 18161 | 4604 | 73060 | 595 | |||
| Scaffold | Velvet | 95486 | 26570 | 268283 | 179 | k = 31,exp_cov = auto, cov_cutoff = auto | |
| D-Velvet | 95429 | 26570 | 268084 | 175 | |||
| ABySS | 96308 | 25780 | 268372 | 124 | k = 33, n = 10 | ||
| D-ABySS | 96904 | 27002 | 210775 | 122 | |||