Skip to main content
. 2011 Mar 29;12:85. doi: 10.1186/1471-2105-12-85

Table 7.

Assembly quality and parameters after further tuning parameters for some datasets

Datasets Type Assembler N50 N90 MAX #Seq Parameters
SRR006331 Contig D-ABySS 6130 1513 16397 311 k = 24, c = 7

SRR001665 Contig D-ABySS 20068 5147 73062 565 k = 31, c = 12

Scaffold D-Velvet 101245 30793 269944 146 k = 31, exp_cov = 36, cov_cutoff = 13