Figure 4. Intersection between our dataset and two published datasets of SCNA-genes and derived pathways.

A. Intersection between amplified genes in published melanoma datasets (Stark and Hayward 2007; Gast et al., 2010) and our list of over-expressed genes within focal amplifications B. Intersection between genes within homozygous deletions from the Stark and Hayward and Gast et al. datasets and our list of non-expressed genes within deletions C. Intersection between pathways found significantly affected by SCNAs from our analysis of the three datasets.