Table 2. A comparative analysis of subunit structure of Mtb BfrB with representative ferritins from archaea, eubacteria and eukarya using the DaliLite -pairwise option vs 3.1.
Organism (ferritin annotation) | PDB-Chain | Z score | RMSD (Å) | Naligned | Total N | Identity (%) | Solvation Energy (kcal/mol) | Reference |
Eubacteria ferritins | ||||||||
M. tuberculosis | BfrB_A | - | - | - | 181 | −3956.8 | This study | |
C. jejuni | 1krq_A | 22.9 | 1.1 | 156 | 164 | 24 | −3651.4 | Unpublished |
H. pylori | 3bve_A | 22.4 | 1.2 | 157 | 173 | 19 | −3343.4 | [18] |
E. coli | 1eum_A | 22.4 | 1.3 | 154 | 161 | 19 | −4140.6 | [15] |
Archaebacteria ferritins | ||||||||
P. furiosus | 2jd6_O | 22.4 | 1.8 | 156 | 167 | 27 | −3855.4 | [16] |
A. fulgidus | 1s3q_J | 22.1 | 1.6 | 157 | 164 | 27 | −4576.6 | [17] |
T. maritima | 1vlg_A | 22.0 | 1.7 | 157 | 164 | 24 | −4473.6 | Unpublished |
Eukaryotic ferritins | ||||||||
Human H -chain | 2cei_A | 20.8 | 1.2 | 151 | 172 | 25 | −3798.2 | [7] |
Insect H-chain | 1z6o_M | 19.1 | 1.5 | 151 | 191 | 27 | −3528.0 | [14] |
Insect L-chain | 1z6o_A | 17.7 | 1.7 | 150 | 212 | 17 | −3642.5 | [14] |
Horse spleen | 1ies_A | 20.6 | 1.2 | 152 | 174 | 18 | −2991.4 | [11] |
Mouse L-chain | 1h96_A | 20.5 | 1.2 | 151 | 166 | 19 | −3062.5 | [74] |
Bullfrog L ferritin | 1rcc_A | 20.0 | 1.8 | 155 | 171 | 23 | −2435.0 | [9] |
Human Mitochondria | 1r03_A | 20.7 | 1.2 | 151 | 170 | 25 | −4213.3 | [75] |
Bullfrog M ferritin | 1mfr_A | 20.3 | 1.6 | 154 | 171 | 25 | −3999.9 | [8] |
Soybean | 3a68_A | 20.2 | 1.2 | 153 | 194 | 28 | −4673.3 | [13] |
Mycobacterial heme-containing bacterioferritins (Bfrs) | ||||||||
M. tuberculosis (BfrA) | 2wtl_A | 17.0 | 2.3 | 148 | 161 | 20 | −5109.5 | [38] |
M. smegmatis (Bfr) | 3bkn_A | 17.2 | 2.2 | 148 | 161 | 20 | −4388.7 | [76] |
Mycobacterial DNA binding proteins from starved cells (Dps) | ||||||||
M. smegmatis (Dps1) | 1vei_A | 13.0 | 2.4 | 131 | 175 | 11 | −4189.0 | [58] |
M. smegmatis (Dps2) | 2z90_A | 12.7 | 2.4 | 130 | 161 | 12 | −3964.8 | [77] |