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. Author manuscript; available in PMC: 2012 May 1.
Published in final edited form as: J Microbiol Methods. 2011 Feb 23;85(2):103–113. doi: 10.1016/j.mimet.2011.02.001

Table 1. Primer Sequences.

Restriction enzyme sequences are underlined, attB sequences are indicated by bold stype

RFC.1Nsi1For GGCCATGCATCAAACAAGTTTGTACAAAAAAGCTGAACG
RFC.1NheRev CAGGCTAGCCAATCGAACCACTTTGTACAAGAAAGC
Kpn1BRF1For ATCGGTACCTGCAGGAACAAATTCCCGTATACGCGAG
BRF1NheRev GTAGCTAGCGTTCCCGTTTTGCTCAGTGACTCTTCGTACAGG
Pac1BRF1For CGTTAATTAAAAGAGTAGCAGACTCTGTGACGAGCGAAGACC
BRF1SacIIRev CGACCGCGGAGTCAAATTGCTGAGGCCTCGCAGGACAGTGCG
attB4BRF1For GGGGACAACTTTGTATAGAAAAGTTGTCTGCAGGAACAAATTCCCGTATACGCGAG
attB1BRF1Rev GGGGACTGCTTTTTTGTACAAACTTGCAGTCAAATTGCTGAGGCCTCGCAGGACAGTGCG
attB2BRF1For GGGGACAGCTTTCTTGTACAAAGTGGCGTCTGCTCAACACAGAGTGTACAACCGG
attB3BRF1Rev GGGGACAACTTTGTATAATAAAGTTGCCAAGAGCCTCTCGCTGGAGTTCCAGG
attB1CATFor GGGGACAAGTTTGTACAAAAAAGCAGGCTCCGATAAGCTTGATGGCGATGCATGTCC
attB2CATRev GGGGACCACTTTGTACAAGAAAGCTGGGTCGTGTTAACCGGTTCGACTAAAACAAC
BRF1HAIntFor GATGCTTTCTGGTTATCCGAGCTTATGTCGACTTCAGCG
BRF1HAIntRev GTTGACCATTGATCTACCGTACTTTGTCCG
DP1 CACTTGGTCCTTTGCAGAATTTTGTACGCCC
DP2 CATCATATGGATAGCTAGCGTTCCCGTTTTGC
DP3 GGACATGCATCGCCATCAAGCTTATC
DP4 CTTGTTGTGCTTCTGTCAAGCACCTCGGC
BRF1DP5 CTGGAT ATA CCACCGTTGATATATCCC
BRF1DP6 TCTTCGCCCCCGTTTTCACCATGGG
attB4UPRT2kbFor GGGGACAACTTTGTATAGAAAAGTTGTCCGTGTACCTGCCGGGCCTTGCATCC
attB1UPRT2kbRev GGGGACTGCTTTTTTGTACAAACTTGCCGTAGAAGCCGGGGCCGCTACAAGG
attB2UPRT2kbFor GGGGACAGCTTTCTTGTACAAAGTGGCGGACAGACCGCTGACGGAATCGCGG
attB3UPRT2kbRev GGGGACAACTTTGTATAATAAAGTTGCCCTGCCGGTGCGTTTGCGCTCTTC
UPRT2kbFor(DisFLF) CTCGCCTCAGACAATTTGTCAACTGC
UPRT2kbRev(DisFLR) CTGGTGCGTACTTCTGTATGTAGCC
UPRT1kbFor(DisFLF) GCGCCACCCGCTGTGCCTAGTATCG
UPRT1kbRev(DisFLR) CGGGAATCAGACCCTCGTCTCCGGTGG
UPRT0.5kbFor(DisFLF) GTGACTGATTTTCTGCACGTTGGC
UPRT0.5kbRev(DisFLR) GTAACGTGGACCATTCTTCACATTGC
DisSplit For CCACCGTTGATATATCCCAATGGCATCG
DisSplitRev GCATTCTGCCGACATGGAAGCCATCACAAA
DP7 TGCACGGATCCACAGGAGACTTTATCTCGC
DP8 AATTCCCTACGGCAGGACACCGTTGTTCTTGC
DP9 GCTCCTTGTCGATCCCCGATATTCGAC
DP10 ATTTCGGTGACCGGTACTTTGGAACCATG
DP11 CCACCGTTGATATATCCCAATGGCATCG
DP12 GCATTCTGCCGACATGGAAGCCATCACAAA
Brf1ProbeFor ACGCAGCTCCCTCGAAAAGGAAGGG
Brf1ProbeRev AACGGTCGAGGGAACTCGAAACGCC
CATProbeFor CCACCGTTGATATATCCCAATGGCATCG
CATProbeRev GCATTCTGCCGACATGGAAGCCATCACAAA
UPRTRTFor GCGCAGGTCCCAGCGAGCGGAAAG
UPRTRTRev CATGGTTCCAAAGTACCGGTCACCG
Actin RTFor GCGGATGAAGAAGTGCAAGCCTTGG
ActinRTRev GAAGCACTTGCGGTGGACGATGCTCGGG