Table 2. TDT analysis of genetic variants and KD susceptibility in US/UK/Australian trios (n=451)*.
Chr. | Gene | rs number | Allele 1/2 | Allele 2 | OR | 95%CI | p† | |||
---|---|---|---|---|---|---|---|---|---|---|
Frequency | Transmitted | Untransmitted | ||||||||
1 | TGFB2 | rs2796817 | A/C | 0.13 | 139 | 98 | 1.42 | 1.10 | 1.84 | 0.0092 |
3 | TGFBR2 | rs11466480 | A/C | 0.03 | 12 | 27 | 0.44 | 0.23 | 0.88 | 0.024 |
15 | SMAD3 | rs4776338 | A/G | 0.42 | 272 | 181 | 1.50 | 1.25 | 1.81 | 0.000022 |
rs7162912 | C/A | 0.31 | 229 | 174 | 1.32 | 1.08 | 1.60 | 0.0071 | ||
rs12901071 | A/G | 0.29 | 230 | 169 | 1.36 | 1.12 | 1.66 | 0.0026 | ||
rs1438386 | A/G | 0.41 | 190 | 237 | 0.80 | 0.66 | 0.97 | 0.026 | ||
rs6494633 | G/A | 0.43 | 174 | 219 | 0.80 | 0.65 | 0.97 | 0.026 |
Results are shown only for SNPs with a nominal p-value <0.05
p values <0.0003 remained significant after Bonferroni correction
OR: odds ratio, CI: confidence interval