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. 2010 Dec 7;39(7):2890–2902. doi: 10.1093/nar/gkq1227

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© The Author(s) 2010. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — RNA editing sites in I. engelmannii mitochondrial genes displayed with the default graphic tool options of PREPACT (39). Non-silent C-to-U and U-to-C editings are indicated by blue or red lines, respectively, and green lines indicate silent editings. RNA-editing patterns are exemplarily shown for selected genes nad5 (A), nad3 (B), atp4 (C), the maturase in atp9i87g2 (D), nad4 (E), cox2 (F) and nad1 (G). Group II intron insertion sites are indicated, those shown with stippled lines are absent in Isoetes, coinciding with regions lacking RNA-editing sites (horizontal lines with arrowheads). The atp9i87 maturase reading frame is in frame with the first 29 codons of atp9 which contain the upstream group II intron atp9i21.