Table 3.
Performance of GRS in compressing rice genome of TIGR6 using TIGR5 as the reference
| Chromosome number | Varied sequence percentage (%) | Raw file size (MB) | Compressed file size | Compression rate |
|---|---|---|---|---|
| 1 | 0.757 801 | 42.0 | 1.4 MB | 30.0 |
| 2 | 0.013 898 | 34.8 | 1.4 KB | 25 453.7 |
| 3 | 0.168 381 | 35.3 | 46.6 KB | 775.7 |
| 4 | 0.096 345 | 34.2 | 35.3 KB | 992.1 |
| 5 | 0.069 046 | 29.0 | 6.0 KB | 4949.3 |
| 6 | 0.000 000 | 30.3 | 0 | |
| 7 | 0.027 041 | 28.8 | 4.0 KB | 7372.8 |
| 8 | 0.479 452 | 27.6 | 115.5 KB | 244.7 |
| 9 | 0.000 000 | 22.3 | 0 | |
| 10 | 1.128 503 | 22.4 | 770.1 KB | 29.8 |
| 11 | 0.188 992 | 27.6 | 2.3 MB | 12.0 |
| 12 | 0.000 000 | 26.7 | 0 | |
| The whole genome | 0.244 122 | 361.0 | 4.4 MB | 82.0 |
The verified sequence percentage of each chromosome, the size of raw sequence file and compressed file, as well as the compression rate are shown.