Figure 4.

ref loci and features of Ref RNAs. Squares are: ‘red filled’ for ncRNAs; ‘red empty’ for ncRNAs or riboswitches; ‘black empty’ for potential 5′-UTRs; and ‘gray’ for antisense organization. Red arrows symbolize characterized transcripts, dotted lines represent putative 5′-UTRs. Red and gray lollipops represent putative transcription terminators. Annotated ORFs in the V583 genome are shown by gray horizontal arrows, and predicted ORFs in Ref RNA sequences are symbolized by diagonally striped bar arrows. Representation is not at scale; sequences are provided as supplementary data (Supplementary Figure S3).