Table 4.

Read counts for the 8 lanes as mapped with Bowtie

				Sheep (%)			Cow (%)
lane	reads	mapped reads	%	annot	unannot	de novo	annot	unannot
1	22,145,090	17,127,532	77.3	11.8	0.1	51.2	35.4	1.5
2	23,356,043	17,964,339	76.9	11.5	0.1	51.4	35.5	1.5
3	27,617,415	17,964,339	76.3	10.8	0.4	48.7	38.6	1.5
4	20,234,612	14,980,730	74.0	10.5	0.1	47.6	40.4	1.3
5	24,793,840	18,367,757	74.1	12.1	0.2	48.4	37.6	1.7
6	18,894,344	13,810,552	73.1	11.0	0.1	48.6	38.7	1.5
7	18,788,777	13,599,338	73.1	12.1	0.2	49.6	36.7	1.4
8	21,722,529	14,276,174	65.7	11.8	0.2	48.2	38.2	1.5

The sections entitled Sheep (Ovis aries) and Cow (Bos taurus) indicate the percentage of the corresponding target sequences for the mapped reads for each of the eight lanes. See also Figure 3.