Table 1. Kinetic parameters of intrinsic and Gre-stimulated endonuclease reaction catalyzed by the WT and mutant E813A, D814A RNAPs.
Relative rate
|
||||||
---|---|---|---|---|---|---|
RNAP | GreB | Vmax, min-1 | At 10 mM MgCl2 | At 60 mM MgCl2 | Kd, nM (GreB) | Kd, mM (Mg2+) |
WT | WT | 25-35*† | 2,000-3,500 | 330-580 | 170 | 0.2-0.3 |
WT | E44Q | 0.14-0.16*‡ | 4-6 | 1.3-2 | 100 | 9-12 |
WT | D41N | 0.3-0.6 × 10-2*‡ | 0.1-0.12 | 0.05-0.07 | 180 | 15-20 |
WT | — | 1.0-1.3 × 10-2§ | 1 | 1 | — | >60 |
ED/AA | WT | 3.4-4.6*† | 150-200 | — | 150 | 0.1-0.3 |
At saturating concentration of MgCl2.
Calculated based on the cleavage rate measured in the presence of 10 nM GreB and Kd (GreB).
The rate measured at 3 μM GreB. All measurements have been performed at pH 7.5, 21°C.
At 10 mM MgCl2.