Skip to main content
. Author manuscript; available in PMC: 2011 Apr 30.
Published in final edited form as: J Mol Biol. 2010 Feb 23;398(2):320–331. doi: 10.1016/j.jmb.2010.02.034

Table 1. Thermodynamic parameters, microscopic rate constants and kinetic m-values for monomeric variants.*.

WT A4V L38V G93A L106V S134N
Apo reduceda

ΔG(U/M)°
b
-3.95±0.1 -1.09c -0.22c +0.12c -0.40c -3.97±0.16
m(U/M) 2.23±0.11 2.23d 2.23d 2.23d 2.23d 2.08±0.08

Apo oxidizeda, e

ΔG(U/M)°
b
-4.48±0.07 -2.83±0.07 -2.32±0.15 -1.87±0.07 -2.52±0.08 -4.54±0.10
m(U/M) 1.65±0.02 1.88±0.04 1.91±0.08 1.89±0.04 2.09±0.05 1.73±0.03

Apo oxidizeda, e

kf 0.056±0.002 0.15±0.02 0.033±0.006 0.029±0.004 0.030±0.003 0.039±0.004
mf
1.20±0.05 1.5±0.1 1.36±0.20 1.37±0.18 1.33±0.13 1.13±0.04
ku (2.02±0.40)×10-5 (1.0±0.1)×10-3 (3.5±1.5)×10-4 (1.2±0.2)×10-3 (5.0±1.0)×10-4 (1.2±0.1)×10-5
mu
-0.58±0.01 -0.64±0.03 -0.78±0.09 -0.74±0.03 -0.74±0.05 -0.65±0.01
ΔG(U/M)°
-4.61±0.12 -2.92±0.2 -2.65±0.28 -1.85±0.13 -2.37±0.13 -4.70±0.08
m(U/M)f 1.79±0.05 2.14±0.1 2.14±0.22 2.11±0.18 2.07±0.14 1.78±0.04

Zn oxidizedg

kf 0.74±0.01 0.87±0.15 0.27±0.05 0.19±0.05 0.34±0.05 0.64±0.01
mf
2.93±0.07 3.0±0.1 2.89±0.09 2.48±0.17 3.39±0.10 2.95±0.10
ku (0.23±0.08)×10-7 (1.77±0.39)×10-7 (2.8±0.8)×10-7 (4.1±1.2)×10-7 (13.3±3.9)×10-7 (2.8±1.2)×10-7
mu
-1.76±0.05 -1.85±0.03 -2.01±0.06 -1.88±0.06 -1.68±0.06 -1.47±0.13
ΔG(U/M)°
h
-18.0±0.2 -17.0±0.2 -15.3±0.5 -15.6±0.2 -15.2±0.2 -16.5±0.3
m(U/M)f 4.69±0.09 4.85±0.1 4.90±0.11 4.36±0.18 5.07±0.12 4.42±0.13
ΔΔGZn°
-13.4±0.2 -14.1±0.2 -12.7±0.5 -13.8±0.2 -12.8±0.2 -11.8±0.3

Kdh 100±39 pM 31±15 pM 360±350 pM 55±23 pM 270±110 pM 1600±840 pM
*

Units for the U ⇆ M reaction: kf and ku, s-1; mf, mu and m(U/M), kcal mol-1 M-1; ΔG(U/M.)°.

ΔΔGZn.°. kcal mol-1.

a

Denaturation was performed with urea.

b

Equilibrium data were fit to a two-state model, U⇆M, by globally analyzing the CD signal at 20 different wavelengths between 220 and 240 nm.

c

Due to the constraints required to fit these titrations, the error in the free energy of folding is approximated to be ±0.3 kcal mol-1.

d

Parameter was fixed to the WT value.

e

WT values adapted from Svensson et al.16

f

Calculated according to mtot = |mu| + |mf.|

g

Denaturation was performed with Gdn-HCl.

h

The free energy difference between U+Zn ⇆ N•Zn and the Zn affinity was calculated as described in Kayatekin et al. 30