Table 1. Thermodynamic parameters, microscopic rate constants and kinetic m‡-values for monomeric variants.*.
WT | A4V | L38V | G93A | L106V | S134N | ||
---|---|---|---|---|---|---|---|
Apo reduceda | |||||||
|
-3.95±0.1 | -1.09c | -0.22c | +0.12c | -0.40c | -3.97±0.16 | |
m(U/M) | 2.23±0.11 | 2.23d | 2.23d | 2.23d | 2.23d | 2.08±0.08 | |
Apo oxidizeda, e | |||||||
|
-4.48±0.07 | -2.83±0.07 | -2.32±0.15 | -1.87±0.07 | -2.52±0.08 | -4.54±0.10 | |
m(U/M) | 1.65±0.02 | 1.88±0.04 | 1.91±0.08 | 1.89±0.04 | 2.09±0.05 | 1.73±0.03 | |
Apo oxidizeda, e | |||||||
kf | 0.056±0.002 | 0.15±0.02 | 0.033±0.006 | 0.029±0.004 | 0.030±0.003 | 0.039±0.004 | |
|
1.20±0.05 | 1.5±0.1 | 1.36±0.20 | 1.37±0.18 | 1.33±0.13 | 1.13±0.04 | |
ku | (2.02±0.40)×10-5 | (1.0±0.1)×10-3 | (3.5±1.5)×10-4 | (1.2±0.2)×10-3 | (5.0±1.0)×10-4 | (1.2±0.1)×10-5 | |
|
-0.58±0.01 | -0.64±0.03 | -0.78±0.09 | -0.74±0.03 | -0.74±0.05 | -0.65±0.01 | |
|
-4.61±0.12 | -2.92±0.2 | -2.65±0.28 | -1.85±0.13 | -2.37±0.13 | -4.70±0.08 | |
m(U/M)f | 1.79±0.05 | 2.14±0.1 | 2.14±0.22 | 2.11±0.18 | 2.07±0.14 | 1.78±0.04 | |
Zn oxidizedg | |||||||
kf | 0.74±0.01 | 0.87±0.15 | 0.27±0.05 | 0.19±0.05 | 0.34±0.05 | 0.64±0.01 | |
|
2.93±0.07 | 3.0±0.1 | 2.89±0.09 | 2.48±0.17 | 3.39±0.10 | 2.95±0.10 | |
ku | (0.23±0.08)×10-7 | (1.77±0.39)×10-7 | (2.8±0.8)×10-7 | (4.1±1.2)×10-7 | (13.3±3.9)×10-7 | (2.8±1.2)×10-7 | |
|
-1.76±0.05 | -1.85±0.03 | -2.01±0.06 | -1.88±0.06 | -1.68±0.06 | -1.47±0.13 | |
|
-18.0±0.2 | -17.0±0.2 | -15.3±0.5 | -15.6±0.2 | -15.2±0.2 | -16.5±0.3 | |
m(U/M)f | 4.69±0.09 | 4.85±0.1 | 4.90±0.11 | 4.36±0.18 | 5.07±0.12 | 4.42±0.13 | |
|
-13.4±0.2 | -14.1±0.2 | -12.7±0.5 | -13.8±0.2 | -12.8±0.2 | -11.8±0.3 | |
Kdh | 100±39 pM | 31±15 pM | 360±350 pM | 55±23 pM | 270±110 pM | 1600±840 pM |
Units for the U ⇆ M reaction: kf and ku, s-1; , and m(U/M), kcal mol-1 M-1; .
. kcal mol-1.
Denaturation was performed with urea.
Equilibrium data were fit to a two-state model, U⇆M, by globally analyzing the CD signal at 20 different wavelengths between 220 and 240 nm.
Due to the constraints required to fit these titrations, the error in the free energy of folding is approximated to be ±0.3 kcal mol-1.
Parameter was fixed to the WT value.
WT values adapted from Svensson et al.16
Calculated according to mtot = |m‡u| + |m‡f.|
Denaturation was performed with Gdn-HCl.
The free energy difference between U+Zn ⇆ N•Zn and the Zn affinity was calculated as described in Kayatekin et al. 30