|
End-user software packages
|
|
|
| Genomic workbench/CLCbio |
Multi-task |
http://www.clcbio.com/index.php?id=1331
|
| NextGENe/SoftGenetics |
Multi-task |
http://softgenetics.com/NextGENe.html
|
| Genomatix Genome Analyzer |
Multi-task |
http://www.genomatix.de/genome_analyzer.html
|
| Zoom |
Multi-task |
http://www.bioinformaticssolutions.com/products/zoom/index.php
|
| SeqMan Ngen/DNASTAR |
Multi-task |
http://www.dnastar.com/t-products-seqman-ngen.aspx
|
| JMP Genomics |
Multi-task |
http://www.jmp.com/software/genomics/index.shtml
|
| RTG/Real Time Genomics |
Multi-task |
http://www.realtimegenomics.com/RTG-Software
|
| PASS |
Multi-task |
http://pass.cribi.unipd.it/cgi-bin/pass.pl?action=Download
|
| CASAVA |
Multi-task |
http://www.illumina.com/software/
|
| Geneus/GenoLogics |
Multi-task |
http://www.genologics.com/solutions/research-informatics/
|
| Roche Analysis tools |
Multi-task |
http://454.com/products-solutions/analysis-tools/index.asp
|
| VSRAP |
Multi-task |
http://sourceforge.net/apps/mediawiki/vancouvershortr/
|
| BING |
Multi-task |
http://www.dinulab.org/bing
|
| PaCGeE/PGI |
Multi-task |
http://personalgenomicsinstitute.org/index.php/
|
| GATK |
Multi-task |
http://www.broadinstitute.org/gsa/wiki/index.php/
|
| Geneious Pro |
Multi-task |
http://www.geneious.com/default,1246,NGS%20Assembly.sm
|
| Partek GS/Partek |
Multi-task |
http://www.partek.com/partekgs
|
| Bioscope |
Multi-task |
https://products.appliedbiosystems.com/ab/en/US/adirect/
|
|
Cloud computing
|
|
|
| Crossbow |
Mapping and SNP calling |
http://bowtie-bio.sf.net
|
| CloudBurst |
Reference-based mapping |
http://sourceforge.net/apps/mediawiki/cloudburst-bio/
|
| Contrail |
De novo assembly |
http://sourceforge.net/apps/mediawiki/contrail-bio/
|
| Cloud-MAQ |
Modified-Maq for cloud |
http://geschickten.com/download.html
|
| Bioscope |
Reference-based mapping |
https://products.appliedbiosystems.com/ab/en/US/adirect/
|
| Cycle Computing |
Cloud computing |
http://www.cyclecomputing.com/
|
| GenomeQuest |
Customer service |
http://www.genomequest.com/
|
| Geospiza/GeneSifter |
Customer service |
http://www.geospiza.com/Contact/genesiftertrial_ng.shtml
|
