Table 4.
Percent amino acid identity of the JCV predicted proteins amongst the three viruses
| Percent amino acid identity (total protein length in amino acids) | |||||||
|---|---|---|---|---|---|---|---|
| Virus pair | N (235) | NSs (92) | M poly (1444) | GNa (286) | NSMb (163) | GCc (969) | L (2263) |
| JCV/61/CO-cl & JCV/03/CT-cl | 97 | 93 | 94 | 98 | 91 | 94 | 97 |
| JCV/61/CO-cl & JCV/04/CT-cl | 98 | 92 | 94 | 99 | 98 | 94 | 99 |
| JCV/03/CT-cl & JCV/04/CT-cl | 97 | 91 | 96 | 99 | 91 | 96 | 97 |
a For this comparison, GN is defined as amino acids 16-301 of the M polyprotein.
b For this comparison, NSM is defined as amino acids 302-464 of the M polyprotein.
c For this comparison, GC is defined as amino acids 476-1444 of the M polyprotein.