Table 3. Differentially expressed genes in INF1 vs. flooded leaves of N. benthamiana (1 h after the treatment).

	Number of tags
Tag sequence*	Flooding	INF1	Gene product†
TTTTCTATGTTCGGATTCTTTG	17	8	Chlorophyll a/b binding protein
AGGAATAGAGGGCAAGGTGCTC	11	6	Phosphoglycerate kinase (chloroplast)
GGCTTTTGCCACTAACTTTGTA	14	4	Chlorophyll a/b binding protein
GAGCAATATGAAGACCACAGAG	11	3	Alanine aminotransferase
GCTCTTGAAGAGGTTGTGAAAG	11	3	Glycolate oxidase
GGCAACAATGCTCTAGAGAAAG	10	2	ATP synthase (chloroplast)
CCTAGCTATTGACTACTGAAGT	10	2	No match
GTTAAGGTTATTGCTTGGTATG	7	2	Glyceraldehyde 3-phosphate dehydrogenase (chloroplast)
TTTCCTTGACGATCACTCTTGG	7	2	PhotosystemII 23-kDa protein
GTGATTCCCGACGTAGCCGAAG	6	1	PhotosystemII protein
TTGCAACTTCTAGTCAATGACT	16	4	Phospholipase C2
ATGGCCAAGTAATTTCACCATC	6	1	No match
AACTCATTAGAGACTCGAAGGG	6	0	Amino transferase
CAACACGAGCACGCACCTCTCT	0	7	No match
TGCGGGATTCGGTGGTGCCGGA	5	7	Ubiquitin-conjugated protein
TTCGGGTGCACTGATGCCACTC	32	33	Ribulose bisphosphate carboxylase small subunit
Total number of tags	5,095	5,089

^*Tags represented as a 22-bp sequence excluding the NIaIII site (CATG).

^†Encoded proteins were deduced by blast search with 3′ RACE fragment recovered by using a 26-bp tag primer.