Table 1.
Strain | SNP subtype |
SNPs and InDels specific to a strain or a group of strains |
Sequencing method used |
Specific pseudogenes |
---|---|---|---|---|
TN (India) | 1A | 21 | ABI | |
Thai-53 (Thailand) | 1A | 23 | Illumina | ML0472 ML2472c ML2687c |
NHDP63 (USA) | 3I | 65 | Illumina | ML2678 ML2472c |
Br4923 (Brazil) | 4P | 65 | ABI | ML0825c |
SNPs in more than one strain: 50; total number of polymorphic loci: 215.
InDel: Insertion-deletion; SNP: Single nucleotide polymorphism.