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. Author manuscript; available in PMC: 2011 Apr 14.
Published in final edited form as: Methods Mol Biol. 2010;604:285–296. doi: 10.1007/978-1-60761-444-9_19

Table 1.

Summary of public PeptideAtlas builds

Build # Exps # MS Runs Searched Spectra IDs P>0.9 Distinct Peptides Distinct Proteins
Human All 219 54 k 49 M 5.6 M 97 k 12141
Human Plasma 76 48 k 16 M 1.8 M 18 k 2486
Drosophila 43 1769 7.5 M 498 k 72 k 9124
Drosophila PhosphoPep 4 448 0.9 M 170 k 10 k 4583
Yeast 53 2957 6.5 M 1.1 M 36 k 4336
Mouse 59 3097 10 M 1.4 M 51 k 7686
Halobacterium 88 497 0.5 M 76 k 12 k 1518
S. pyogenes 5 64 215 k 52 k 7 k 1068