Table 3.
SNP (study, RAF) | Published risk allele, OR for CAD/MI (P-value) | Plasma CXCL12 levels by number of risk alleles in PennCath | Plasma CXCL12 levels by number of risk alleles in PennCAC |
---|---|---|---|
rs501120 (WTCCC, 0.87; PennCath, 0.87; PennCAC, 0.86) | T, 1.33 (10−8)a | TTï (n = 874) 2.34 ± 0.49 | TT‖ (n = 993) 2.52 ± 0.57 |
TCï (n = 271) 2.28 ± 0.46 | TC‖ (n = 345) 2.49 ± 0.54 | ||
CCï (n = 28) 2.23 ± 0.53 | CC‖ (n = 35) 2.41 ± 0.46 | ||
rs1746048b (MIGEN, 0.86; PennCath, 0.87; PennCAC, 0.86) | C, 1.17 (10−9)c | CC¶ (n = 874) 2.33 ± 0.49 | N/A |
CT¶ (n = 276) 2.27 ± 0.46 | N/A | ||
TT¶ (n = 27) 2.21 ± 0.52 | N/A |
RAF, risk allele frequency.
bBased on quantitative trait means for rs1632484, which has r2 = 0.98 in PennCath and r2 = 1.0 in HapMap with rs1746048. The allelic dosage effects are based upon rs1632484 because it was directly genotyped in PennCath, whereas rs501120 was imputed.
cData derived from Myocardial Infarction Genetics Consortium Study.3
ïP for trend = 0.038.
‖P for trend = 0.005.
¶P for trend = 0.036.