Supplementary Table 4.

Carrasquillo et al, 2009 GWAS SNPs (5×10⁻⁵ < p < 5×10⁻⁸) compared with Reiman et al, 2007 and Li et al, 2008. The GWAS from which SNPs were initially selected is shown on the left. Each row represents a SNP with a p-value between 5×10⁻⁵ to 5×10⁻⁸. If a perfect proxy was used the corresponding rs number is listed. No SNPs replicated across studies using the Carrasquillo et al, 2009 GWAS as the primary dataset.

Carrasquillo et al, 2009						Li et al, 2008		Reiman et al, 2007		Combined p-value	Corrected p-value
SNP	CHR	BP	Gene	Position	p-value	SNP	p-value	SNP	p-value
rs2318144	8	58277297	ncRNA		2.22E-06	rs17194995	2.04E-01	rs17194995	3.13E-01	1.42E-07
rs1279795	23	123152101		5.02E-06	rs1279795	8.42E-01	-		4.22E-06
rs3007421	1	6452776	PLEKHG5	Intron	6.54E-06	rs3007421	6.51E-01	rs3007421	4.68E-01	1.99E-06
rs6546452	2	25834776			8.55E-06	rs17680828	9.00E-01	rs17680828	9.68E-01	7.45E-06
rs7318037	13	81367146			1.15E-05	rs4456389	9.82E-01	rs4456389	2.39E-01	2.70E-06
rs2118732	5	79419032			1.32E-05	rs7736549	5.49E-01	-		7.25E-06
rs8039031	15	34954382	MEIS2	Downstream	2.26E-05	rs8039031	5.04E-01	rs8039031	9.92E-02	1.13E-06
rs7245160	18	70417826	AK056288/LOC400657	Upstream	2.66E-05	rs7245160	4.60E-01	rs7245160	4.15E-01	5.08E-06
rs856675	14	84405968			3.83E-05	rs17737309	7.10E-01	rs17737309	2.87E-01	7.81E-06