. Author manuscript; available in PMC: 2012 May 1.

Published in final edited form as: Proteins. 2011 Mar 4;79(5):1589–1608. doi: 10.1002/prot.22985

Table V. Results from MINER and McBASC Co-evolution Analyses.

		Linker positions (LacI numbers)
		45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62
		c^a	c	c	c	c	h	h	h	h	h	h	h	h	h/c^b	c	c	c	c
				Y		P				A			L
MINER	analyses used subsets of the short representative list (Table I); z score ≤ -1.5
All Seq								X	X	X	X	X	X	X	X
YPAL+YPALlike										X	X	X	X	X	X	X
YPALonly								X	X	X	X	X	X	X	X
McBASC	correlation score in top 25%
All Seq		X				X	X			X	X		X
YPAL+YPALlike		X				X	X			X			X
YPALonly		X					X		X		X	X						X

Secondary structure: “c” coil’ “h”, helix.

The end of the helix differs in LacI and PurR⁴⁹ and presumably differs in other homologs.