Table 4.
SNP | Allelea | Sample | Genotype distribution | Codominat Model | Dominant Model | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DD-DA-AA | DD vs DA | DD vs AA | DD vs DA+AA | ||||||||||
Cases | Controls | OR | 95% CI | P | OR | 95% CI | P | OR | 95% CI | P | |||
rs6067377 | T/C | all samples | 252-368-127 | 266-360-115 | 1.08 | 0.86-1.35 | 0.51 | 1.17 | 0.86-1.58 | 0.33 | 1.10 | 0.89-1.36 | 0.38 |
adjusted for age | 240-359-125 | 266-360-115 | 1.11 | 0.87-1.41 | 0.42 | 1.12 | 0.81-1.54 | 0.50 | 1.11 | 0.88-1.39 | 0.39 | ||
rs2344481 | A/G | all samples | 628-112-2 | 658-80-3 | 1.47 | 1.08-1.99 | 0.01 | 0.70 | 0.12-4.19 | 0.69 | 1.44 | 1.06-1.95 | 0.02 |
adjusted for age | 606-111-2 | 658-80-3 | 1.40 | 1.01-1.94 | 0.04 | 0.77 | 0.12-5.09 | 0.79 | 1.38 | 1.00-1.91 | 0.05 | ||
rs238302 | A/G | all samples | 82-335-327 | 85-330-324 | 1.05 | 0.75-1.48 | 0.77 | 1.05 | 0.75-1.47 | 0.79 | 1.05 | 0.76-1.45 | 0.77 |
adjusted for age | 82-335-327 | 85-330-324 | 1.12 | 0.78-1.61 | 0.54 | 1.09 | 0.76-1.57 | 0.63 | 1.11 | 0.79-1.56 | 0.56 | ||
rs2281148 | C/T | all samples | 45-242-457 | 27-237-478 | 0.61 | 0.37-1.02 | 0.06 | 0.57 | 0.35-0.94 | 0.03 | 0.59 | 0.36-0.96 | 0.03 |
adjusted for age | 42-234-445 | 27-237-478 | 0.64 | 0.37-1.10 | 0.11 | 0.62 | 0.37-1.05 | 0.08 | 0.63 | 0.37-1.05 | 0.08 | ||
rs2235460 | A/G | all samples | 100-349-270 | 124-368-243 | 1.18 | 0.87-1.59 | 0.29 | 1.38 | 1.01-1.89 | 0.05 | 1.26 | 0.94-1.67 | 0.12 |
adjusted for age | 96-342-262 | 124-368-243 | 1.16 | 0.83-1.61 | 0.38 | 1.29 | 0.92-1.82 | 0.14 | 1.21 | 0.89-1.66 | 0.22 | ||
rs6067889 | A/G | all samples | 448-262-32 | 448-255-30 | 1.03 | 0.83-1.28 | 0.81 | 1.07 | 0.64-1.79 | 0.81 | 1.03 | 0.84-1.27 | 0.77 |
adjusted for age | 432-257-30 | 448-255-30 | 1.07 | 0.85-1.36 | 0.55 | 1.10 | 0.63-1.92 | 0.75 | 1.08 | 0.86-1.35 | 0.52 | ||
rs4811233 | C/G | all samples | 358-295-80 | 378-265-81 | 1.18 | 0.94-1.47 | 0.15 | 1.04 | 0.74-1.47 | 0.81 | 1.14 | 0.93-1.41 | 0.20 |
adjusted for age | 343-289-78 | 378-265-81 | 1.20 | 0.96-1.50 | 0.10 | 1.06 | 0.75-1.50 | 0.74 | 1.17 | 0.95-1.44 | 0.14 | ||
rs6067923 | G/Ab | all samples | 339-322-84 | 356-291-81 | 1.16 | 0.94-1.44 | 0.18 | 1.09 | 0.78-1.53 | 0.62 | 1.15 | 0.93-1.41 | 0.19 |
adjusted for age | 330-331-79 | 356-291-81 | 1.23 | 0.99-1.53 | 0.07 | 1.05 | 0.75-1.48 | 0.77 | 1.19 | 0.97-1.46 | 0.10 |
OR odds ratio; CI confidence interval; A ancestral allele, D derived allele.
Second allele represents the ancestral allele for each locus.
ancestral allele unknown, the major allele was used as reference.
Total numbers of cases and controls may slightly vary among SNPs due to missing genotypes. Bold numbers indicate statistical significance at 5% level. The results were adjusted for age due to significant difference in the median age distribution among the case and the control group.