Table 5.
SNP | Allelea | Sample | Genotype distributionb | Codominat Model | Dominant Model | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
DD-DA-AA | DD vs DA | DD vs AA | DD vs DA+AA | ||||||||||
Cases | Controls | OR | 95% CI | P | OR | 95% | CI | P | OR | 95% | |||
Czech | 606-111-2 | 658-80-3 | 1.47 | 1.07-2.02 | 0.02 | 0.82 | 0.13-5.29 | 0.84 | 1.45 | 1.06-1.98 | 0.02 | ||
rs2344481 | A/G | German | 561-81-4 | 554-69-4 | 1.16 | 0.82-1.63 | 0.40 | 0.95 | 0.23-3.83 | 0.94 | 1.15 | 0.82-1.61 | 0.42 |
Czech & German | 1167-192-6 | 1212-149-7 | 1.34 | 1.06-1.68 | 0.01 | 0.99 | 0.33-2.98 | 0.98 | 1.32 | 1.05-1.66 | 0.02 | ||
Czech | 42-234-445 | 27-237-478 | 0.60 | 0.35-1.03 | 0.06 | 0.57 | 0.34-0.95 | 0.03 | 0.58 | 0.35-0.97 | 0.04 | ||
rs2281148 | C/T | German | 37-199-418 | 41-212-408 | 1.08 | 0.66-1.76 | 0.76 | 1.15 | 0.72-1.83 | 0.57 | 1.12 | 0.71-1.77 | 0.64 |
Czech & German | 79-433-863 | 68-449-886 | 0.81 | 0.56-1.15 | 0.23 | 0.83 | 0.59-1.16 | 0.27 | 0.82 | 0.59-1.15 | 0.25 | ||
Czech | 96-342-262 | 124-368-243 | 1.20 | 0.89-1.65 | 0.26 | 1.39 | 1.00-1.93 | 0.05 | 1.28 | 0.95-1.72 | 0.11 | ||
rs2235460 | A/G | German | 97-302-207 | 120-311-214 | 1.21 | 0.88-1.65 | 0.24 | 1.19 | 0.86-1.66 | 0.30 | 1.20 | 0.89-1.61 | 0.22 |
Czech & German | 193-644-469 | 244-679-457 | 1.21 | 0.97-1.51 | 0.09 | 1.31 | 1.04-1.65 | 0.02 | 1.25 | 1.01-1.54 | 0.04 |
OR odds ratio; CI confidence interval; A ancestral allele, D derived allele.
Second allele represents the ancestral allele for each locus.
Total numbers of cases and controls may slightly vary among SNPs due to missing genotypes. Bold numbers indicate statistical significance at 5% level. The results were adjusted for age due to significant difference in the median age distribution among the case and the control group.