Table 2. Summary of MCM Transcripts.
| New Nomenclature* | Previous Nomenclature | Haplotype | Relative Transcript Abundance (%) | Full-Length Sequence Available | Length Recovered from Pyrosequencing (bp) | Immuno Polymorphism Database ID | Genbank ID |
|---|---|---|---|---|---|---|---|
| Mafa-A1*031:01 | Mafa-A*310101 | M4 | 20.9 | Yes | 1098 | MHC01735 | AM295836, AY958107 |
| Mafa-A1*032:01 | Mafa-A*320101 | M6 | 26.9 | Yes | 1098 | MHC01736 | AM295824, AY958108 |
| Mafa-A1*033:01 | Mafa-A*330101 | M5 | 19.8 | Yes | 1098 | MHC01737 | AY958109 |
| Mafa-A1*047:01 | Mafa-A*470101 | M6 | 15.5 | No | 1090 | MHC01802 | EF028175, HM581955 |
| Mafa-A1*060:05 | M7 | 40.9 | Yes | 1098 | MHC02610 | FJ430071 | |
| Mafa-A1*063:01 | Mafa-A*250301 | M1, M2 | 8.1 | Yes | 1098 | MHC01769 | AM295848, DQ979878 |
| Mafa-A1*063:02 | Mafa-A*250201 | M3 | 15.4 | Yes | 1098 | MHC01728 | AY958100 |
| Mafa-A2*05:01 | M1, M2 | 0.1 | No | 951 | MHC01781 | AM295861 | |
| Mafa-A2*05:04 | M4 | 0.4 | No | 1065 | MHC01223 | AM295864, EF550527 | |
| Mafa-A2*05:11 | M3 | 0.4 | No | 1065 | MHC01789 | AM295871 | |
| Mafa-A2*05:nov | M5 | 0.7 | No | 1065 | # | HQ230581 | |
| Mafa-A4*01:01 | Mafa-A*290101 | M1, M2, M3 | 1.8 | Yes | 1098 | MHC01733 | AY958105 |
| Mafa-A4*0109 | M6 | 0.6 | No | 1074 | # | HM581956 | |
| Mafa-A5*30:01 | Mafa-A*300101 | M4, M7 | 3.0 | Yes | 1098 | MHC01734 | AM295882, AY958106 |
| Mafa-B*011:01 | Mafa-B*04501 | M3 | 25.9 | Yes | 1089 | MHC01648 | AY958143, EU203717 |
| Mafa-B*019:01 | Mafa-B*06001 | M2 | 12.0 | Yes | 1086 | MHC02700 | DQ979879 |
| Mafa-B*027:02 | Mafa-B*09402 | M4 | 6.1 | Yes | 1096 | MHC02730 | FM212816, HM581963 |
| Mafa-B*033:01 | Mafa-B*06501 | M6 | 3.1 | Yes | 1086 | MHC02704 | DQ979883 |
| Mafa-B*036:01:02 | Mafa-B*0110102 | M5 | 10.1 | Yes | 1080 | MHC02707 | EU606046, FM212796 |
| Mafa-B*037:01 | Mafa-B*05001 | M5 | 13.3 | Yes | 1089 | MHC02695 | AY958149 |
| Mafa-B*044:04 | M7 | 10.7 | Yes | 1080 | # | HM581964 | |
| Mafa-B*045:01 | Mafa-B*01201 | M5 | 12.1 | Yes | 1089 | MHC01680 | AB195442, EU203690 |
| Mafa-B*045:03 | Mf-B*nov011 | M6 | 0.5 | Yes | 1089 | # | GQ153330 |
| Mafa-B*046:01 | Mafa-B*0550101 | M1 | 0.9 | Yes | 1080 | MHC02699 | EF442021 |
| Mafa-B*046:09 | M6 | 0.5 | Yes | 1080 | # | HM581959 | |
| Mafa-B*050:04 | Mf-B*nov020 | M5 | 29.1 | Yes | 1080 | # | GQ153337 |
| Mafa-B*051:03 | Mf-B*nov018 | M4 | <0.1 | No | 425 | # | GQ153335 |
| Mafa-B*051:04 | M5 | 0.2 | No | 425 | # | HM581967 | |
| Mafa-B*057:02 | Mafa-B*05402 | M1 | 4.3 | Yes | 691 | MHC02699 | FM212808, HM581958 |
| Mafa-B*060:01 | Mafa-B*07701 | M5 | 4.1 | Yes | 1080 | MHC01682 | EU203692 |
| Mafa-B*060:04 | M6 | 7.2 | Yes | 1080 | # | HM581968 | |
| Mafa-B*060:05:01 | Mf-B*nov003 | M4 | 0.5 | No | 682 | # | HM581965 |
| Mafa-B*060:05:02 | Mf-B*nov003 | M1 | 0.3 | No | 682 | # | GQ153323 |
| Mafa-B*060:06 | Mf-B*nov003 | M7 | 0.6 | No | 682 | # | HM581966 |
| Mafa-B*064:01 | Mafa-B*04601 | M1 | 7.8 | Yes | 1077 | MHC02691 | AY958144 |
| Mafa-B*070:02 | Mf-B*nov008 | M3 | 0.1 | No | 1065 | # | GQ153328 |
| Mafa-B*072:02 | Mafa-B*09001 | M7 | 4.6 | Yes | 1089 | # | HM581961 |
| Mafa-B*075:01 | Mafa-B*05101 | M3 | 46.1 | Yes | 1089 | MHC01649 | AY958150, EU203718 |
| Mafa-B*079:01 | Mafa-B*09301 | M3 | 4.5 | Yes | 683 | MHC02349 | AM943362 |
| Mafa-B*079:03 | M2 | 1.5 | No | 683 | # | HM581962 | |
| Mafa-B*088:01 | Mafa-B*06201 | M4 | 1.0 | Yes | 1089 | MHC02701 | DQ979880 |
| Mafa-B*095:01 | Mafa-B*0490101 | M6 | 40.0 | Yes | 1089 | MHC02028 | AY958148, EU392113 |
| Mafa-B*098:01 | Mafa-B*06601 | M2 | 0.5 | No | 966 | MHC02705 | EF028176, HM581960 |
| Mafa-B*098:04 | M5 | 1.0 | No | 981 | # | HM581969 | |
| Mafa-B*098:05 | Mf-B*nov007 | M3 | 0.3 | Yes | 1089 | # | GQ153327 |
| Mafa-B*098:06 | Mf-B*nov014 | M6 | 0.1 | No | 981 | # | GQ153332 |
| Mafa-B*104:01 | Mafa-B*0440101 | M1 | 64.6 | Yes | 1089 | MHC02689 | AY958141 |
| Mafa-B*109:04 | Mf-B*nov005 | M2 | 0.5 | No | 434 | # | GQ153325 |
| Mafa-B*131:02 | Mf-B*nov001 | M1 | 0.3 | No | 844 | # | GQ153321 |
| Mafa-B*134:01 | Mafa-B*04301 | M1 | 5.3 | Yes | 1089 | MHC02688 | AY958140 |
| Mafa-B*144:02 | Mafa-B*02702 | M1 | 5.6 | Yes | 1089 | MHC02698 | EF442022, HM581957 |
| Mafa-B*147:01 | Mafa-B*04701 | M4 | 70.1 | Yes | 1086 | MHC02692 | AY958145 |
| Mafa-B*148:01 | Mafa-B*0480101 | M2 | 19.5 | Yes | 1080 | MHC02694 | AY958147 |
| Mafa-B*149:01 | Mafa-B*06101 | M5 | 0.9 | Yes | 1089 | MHC02708 | EU606047 |
| Mafa-B*150:01 | Mafa-B*0630101 | M2 | 52.1 | Yes | 1089 | MHC02702 | DQ979881 |
| Mafa-B*151:01 | Mafa-B*06401 | M6 | 2.2 | Yes | 968 | MHC02703 | DQ979882 |
| Mafa-B*152:01:01N | Mf-B*nov002 | M1 | 0.4 | No | 434 | # | GQ153322 |
| Mafa-B*164:02 | Mf-B*nov015 | M7 | 35.2 | Yes | 1089 | # | GQ153333 |
| Mafa-B*165:01 | Mf-B*nov006 | M3 | 0.1 | No | 667 | # | GQ153326 |
| Mafa-B*166:01 | Mf-B*nov019 | M7 | <0.1 | No | 425 | # | GQ153336 |
| Mafa-B*167:01 | Mafa-I*nov002 | M5 | 0.6 | Yes | 1098 | # | HM584118 |
| Mafa-B11L*01:04 | Mf-B*nov012 | M6 | 0.1 | No | 948 | # | GQ153331 |
| Mafa-B11L*01:05 | Mf-B*nov017 | M7 | 0.1 | No | 658 | # | GQ153334 |
| Mafa-I*01:10 | Mafa-I*100101 | M3 | 0.8 | Yes | 1089 | MHC02496 | DQ979884 |
| Mafa-I*01:11 | Mafa-I*100201 | M6 | 0.7 | Yes | 972 | MHC02054 | DQ979885, EU392142 |
| Mafa-I*01:22 | Mafa-I*01012 | M7 | 0.6 | Yes | 1089 | # | AF161864, HM581970 |
| Mafa-I*03:01 | Mafa-I*110101 | M4 | 2.5 | Yes | 1071 | MHC02497 | DQ979886 |
#
represents transcripts that are awaiting an ID from the Immuno Polymorphism Database
*
Recently, there have been several updates to the MCM MHC nomenclature which are reflected in this paper. First, the nomenclature has undergone a transition to include colons in the names (for instance Mafa-A4*0101 is now Mafa-A4*01:01). Additionally, MCM nomenclature has updated the lineage names to better correspond to Indian rhesus macaque lineage names so that comparisons can be made across species.
This table is intended to be a summary of all transcript data available from both this manuscript and previous cloning and Sanger sequencing experiments. Thus, the columns denoting previous nomenclature, full-length sequence availability, IPD ID, and Genbank ID may contain information not directly from this manuscript.