Table 2.

Average AUC for S_full and S₃₀ databases.

	Sfull	S30
ILP-SVM-Seq	0.79	0.77
ILP-SVM-Alncons	0.81	0.81
ILP-SVM-Alnps	0.80	0.81
ILP-SVM-Seq-Alncons	0.85	0.80
ILP-SVM-Alncons-Alnps	0.82	0.82
ILP-SVM-Seq-Alncons-Alnps	0.87	0.82
ILP-DT-Seq	0.67	0.65
ILP-DT-Alncons	0.70	0.69
ILP-DT-Alnps	0.68	0.67
ILP-DT-Seq-Alncons	0.72	0.69
ILP-DT-Alncons-Alnps	0.71	0.71
ILP-DT-Seq-Alncons-Alnps	0.74	0.71
SVM-Ngram-LSA	0.79	0.77
SVM-LA	0.87	0.80
PSI-BLAST	0.75	0.69
HMMer-3.0	0.63	0.60