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. 2011 Mar 17;108(14):5632–5637. doi: 10.1073/pnas.1016959108

Table 2.

Co-occurrence of core cardiac TF peaks

Transcription factors Peaks Genes Examples
1 TF 120,278 14,132 Hand1, Irx4, Tnni3k,
≥ 2 TF 18,343 9,824 Tbx20, Mef2c, Hopx, Scn5a, Gja5
≥ 3 TF 6,434 4,782 Srf, Gata4, Gata6, Mef2d, Nppa, Nppb, Mybpc3
≥ 4 TF 1,715 1,623 Nkx2-5 Mef2a, Tbx5, Hand2, Pparg, Myocd
5 TF 287 286 Ankrd1, Atp2a2, Ryr2, Fhl2, Myh7

Co-occurring peaks were defined as peaks separated by 500 bp or less. Peaks were mapped to the nearest gene within 100 kb. Some genes were associated with multiple peaks. Ankrd1, ankyrin repeat domain 1; Atp2a2, ATPase, Ca++ transporting, cardiac muscle, slow twitch; Fhl2, four and a half LIM domains 2; Gata6, GATA-binding protein 6; Gja5, gap junction protein, α5; Hand1, heart and neural crest derivatives expressed transcript 1; Hand2, heart and neural crest derivatives expressed transcript 2; Hopx, HOP homeobox; Irx4, Iroquois homeobox 4; Mef2c, myocyte enhancer factor 2C; Mef2d, myocyte enhancer factor 2D; Myh7, myosin, heavy chain 7, cardiac muscle, β; Myocd, myocardin; Pparg, peroxisome proliferator-activated receptor γ; Ryr2, cardiac muscle ryanodine receptor-calcium release; Scn5a, sodium channel voltage-gated, type V α subunit; Tbx20, T-box 20; Tnni3k, TNNI3 interacting kinase.