TABLE 4.
Accuracy of the placement of 2 × 100 bp paired-end reads
| ND |
NED% |
|||
| Data | EPA | BLAST | EPA | BLAST |
| Outer QS | ||||
| D150 | 1.14 | 3.38 | 0.63 | 1.76 |
| D218 | 1.44 | 4.77 | 3.6 | 8.45 |
| D500 | 0.84 | 4.88 | 1.75 | 7.35 |
| D628 | 0.56 | 1.83 | 0.83 | 1.83 |
| D714 | 1.31 | 3.59 | 1.77 | 4.78 |
| D855 | 2.0 | 5.98 | 1.11 | 3.35 |
| D1604 | 1.58 | 3.67 | 0.79 | 1.65 |
| Inner QS | ||||
| D150 | 1.9 | 5.3 | 2.23 | 5.64 |
| D218 | 4.43 | 5.21 | 8.16 | 9.38 |
| D500 | 1.59 | 9.41 | 3.15 | 12.24 |
| D628 | 0.85 | 2.95 | 0.55 | 1.13 |
| D714 | 1.66 | 4.9 | 2.9 | 7.76 |
| D855 | 2.9 | 7.54 | 2.04 | 4.61 |
| D1604 | 1.57 | 5.3 | 1.69 | 4.84 |
Notes: The values given are the ND and the normalized edge distance (NED %). The methods used are the EPA (slow insertions under the GTR + Γ model) and BLAST-based nearest neighbor.