Table 2.

Haplotype analysis by sliding window

Markers in Haplotype	Marker Alleles					No. of Informative Families	freq	Z	p-value
C1 C2	A	g				10	0.042	−1.16	0.248
C2 C3		g	t			27	0.123	−1.11	0.269
C3 C4			t	g		35	0.123	−1.62	0.105
C4 C5				a	a	54	0.337	2.75	0.006*
C1 C2 C3	G	g	a			53	0.599	1.06	0.288
C2 C3 C4		g	t	g		19	0.067	−1.82	0.069
C3 C4 C5			a	a	a	49	0.228	2.05	0.040
C1 C2 C3 C4	G	g	t	g		15	0.05	−1.53	0.127
C2 C3 C4 C5		g	a	a	a	46	0.219	2.37	0.018
C1 C2 C3 C4 C5	G	g	a	a	a	42	0.213	2.48	0.013

^*Significant after Bonferroni correction within each haplotype

Each haplotype-specific allele listed was the one with the smallest p-value among all the haplotypic alleles for each haplotype.