Table 2.
Least-Squares Refinement Statistics.
Wild-type Protein Complexed with SAM and dTDP-phenol |
Wild-type Protein Complexed with SAH and dTDP-Quip3N |
H123A Mutant Protein Complexed with SAH and dTDP-Quip3N |
H123N Mutant Protein Complexed with SAH and dTDP- Quip3N |
|
---|---|---|---|---|
resolution limits (Å) | 100 – 1.35 | 100 – 1.79 | 100 – 1.8 | 100 – 1.65 |
aR-factor (overall) %/no. reflections | 18.5/55697 | 21.2/50622 | 18.6/47216 | 19.7/60948 |
R-factor (working)%/no. reflections | 18.3/52903 | 20.9/48053 | 18.3/44824 | 19.4/57875 |
R-factor (free)%/no. reflections | 20.9/2794 | 26.6/2569 | 24.5/2392 | 24.5/3073 |
number of protein atoms | 1,842b | 3,679d | 3,660f | 3,688h |
number of heteroatoms | 334c | 604e | 513g | 544i |
average B value (Å2) | ||||
protein atoms | 15.3 | 20.0 | 16.1 | 15.6 |
ligands | 9.3 | 13.0 | 9.6 | 8.3 |
solvent | 26.6 | 31.9 | 25.9 | 27.3 |
weighted RMS deviations from ideality | ||||
bond lengths (Å) | 0.012 | 0.012 | 0.013 | 0.014 |
bond angles (deg) | 2.2 | 2.1 | 2.3 | 2.3 |
planar groups (Å) | 0.008 | 0.010 | 0.014 | 0.014 |
R-factor = (© | Fo − Fc | / © | Fo |) × 100 where Fo is the observed structure-factor amplitude and Fc is the calculated structure-factor amplitude.
These include a multiple conformation for Glu 191
Heteroatoms include a dTDP-phenol molecule, a SAM molecule, an ethylene glycol molecule, and 272 waters.
These include a multiple conformation for Arg 183 in subunit 1.
Heteroatoms include two dTDP-Quip3N molecules, two SAH molecules, an ethylene glycol molecule, and 478 waters.
These include a multiple conformation for Arg 183 in subunit 1.
Heteroatoms include two dTDP-Quip3N molecules, two SAH molecules, an ethylene glycol molecule, and 387 waters.
These include multiple conformations for Arg 183 in subunit 1, and Arg 90, Asn 123, and Glu 191 in subunit 2.
Heteroatoms include two dTDP-Quip3N molecules, two SAH molecules, two ethylene glycol molecules, and 414 waters.