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. Author manuscript; available in PMC: 2012 Feb 8.
Published in final edited form as: Biochemistry. 2011 Jan 14;50(5):780–787. doi: 10.1021/bi101733y

Table 2.

Least-Squares Refinement Statistics.

Wild-type Protein
Complexed with SAM
and dTDP-phenol
Wild-type Protein
Complexed with SAH
and dTDP-Quip3N
H123A Mutant Protein
Complexed with SAH and
dTDP-Quip3N
H123N Mutant Protein
Complexed with SAH and
dTDP- Quip3N
resolution limits (Å) 100 – 1.35 100 – 1.79 100 – 1.8 100 – 1.65
aR-factor (overall) %/no. reflections 18.5/55697 21.2/50622 18.6/47216 19.7/60948
R-factor (working)%/no. reflections 18.3/52903 20.9/48053 18.3/44824 19.4/57875
R-factor (free)%/no. reflections 20.9/2794 26.6/2569 24.5/2392 24.5/3073
number of protein atoms 1,842b 3,679d 3,660f 3,688h
number of heteroatoms 334c 604e 513g 544i
average B value2)
protein atoms 15.3 20.0 16.1 15.6
ligands 9.3 13.0 9.6 8.3
solvent 26.6 31.9 25.9 27.3
weighted RMS deviations from ideality
bond lengths (Å) 0.012 0.012 0.013 0.014
bond angles (deg) 2.2 2.1 2.3 2.3
planar groups (Å) 0.008 0.010 0.014 0.014
a

R-factor = (© | Fo − Fc | / © | Fo |) × 100 where Fo is the observed structure-factor amplitude and Fc is the calculated structure-factor amplitude.

b

These include a multiple conformation for Glu 191

c

Heteroatoms include a dTDP-phenol molecule, a SAM molecule, an ethylene glycol molecule, and 272 waters.

d

These include a multiple conformation for Arg 183 in subunit 1.

e

Heteroatoms include two dTDP-Quip3N molecules, two SAH molecules, an ethylene glycol molecule, and 478 waters.

f

These include a multiple conformation for Arg 183 in subunit 1.

g

Heteroatoms include two dTDP-Quip3N molecules, two SAH molecules, an ethylene glycol molecule, and 387 waters.

h

These include multiple conformations for Arg 183 in subunit 1, and Arg 90, Asn 123, and Glu 191 in subunit 2.

i

Heteroatoms include two dTDP-Quip3N molecules, two SAH molecules, two ethylene glycol molecules, and 414 waters.