Table 2.
Genes with overlap between SmaI/XmaI interval methylation and transcriptomic change identified with the microarrays
| Gene | SmaI/XmaI interval | TSS | TES | Methylation | Expression |
|---|---|---|---|---|---|
| Abcg5 | chr17:85094508-85094630 | −11,306 | −36,995 | ↑ | ↓ |
| Abcg8 | chr17:85094508-85094630 | 13,098 | −5,104 | ↑ | ↓ |
| Anpep | chr7:86986986-86987196 | 147 | −20,401 | ↑ | ↓ |
| Arl3 | chr19:46648639-46649271 | −380 | −43,357 | ↓ | ↓ |
| Cmah | chr13:24508684-24508983 | 1,842 | −60,321 | ↑ | ↓ |
| Cyp3a16 | chr5:146267013-146267525 | −36,677 | −70,092 | ↓ | ↓ |
| Cyp3a41a | chr5:146267013-146267525 | 78,330 | 52,263 | ↓ | ↓ |
| Dll1 | chr17:15512946-15513849 | −610 | −9,080 | ↓ | ↑ |
| Elavl3 | chr9:21855078-21856138 | 859 | −36,159 | ↓ | ↑ |
| Gad2 | chr2:22547946-22562379 | 77,316 | 5,765 | ↓ | ↑ |
| Hpcal4 | chr4:122879405-122881036 | 20,473 | 8,278 | ↓ | ↑ |
| Mid1 | chrX:166427168-166428555 | 110,308 | −898 | ↑ | ↑ |
| Mid1 | chrX:166439486-166440819 | 122,599 | 11,423 | ↑ | ↑ |
| Mnd1 | chr3:83705005-83706654 | 253,788 | 186,026 | ↓ | ↑ |
| Nsg1 | chr5:38497269-38497579 | 53,282 | 31,007 | ↑ | ↑ |
| Rab42 | chr4:131864258-131864382 | −5,049 | −6,212 | ↑ | ↓ |
| Rev1 | chr1:38684220-38685381 | −498,293 | −57,5170 | ↓ | ↑ |
| Sardh | chr2:27189061-27189187 | −86,792 | −145,222 | ↑ | ↓ |
| Slc32a1 | chr2:158439864-158442039 | 4,458 | −532 | ↓ | ↑ |
| St3gal4 | chr9:34832759-34832929 | 91,551 | 20,320 | ↑ | ↑ |
| Ufm1 | chr3:53525026-53526994 | 141,719 | 133,120 | ↑ | ↓ |
| Zfp281 | chr1:138849567-138850127 | −328,370 | −333,860 | ↓ | ↑ |
Intervals associated with two different genes are underscored. TSS, distance (bp) of SmaI/XmaI interval midpoint from transcription start site relative to the gene; TES, distance (bp) of SmaI/XmaI interval midpoint from transcription end site relative to the gene; 21 genes associated with 20 intervals.