Table 3.
BLAST identifications of the excised DGGE bands
| DGGE amplicon | Identification | Sequence | # Bp | ||||
|---|---|---|---|---|---|---|---|
| Band nr | Primer | # Bp | Species | Accession Nr | % identity | Identical | Total |
| 54.2 | L1401-R (V6-V8) |
397 | Uncultured bacterium | EF405354.1 | 98 | 385 | 389 |
| Eubacterium contortum | L34615.1 | 93 | 364 | 390 | |||
| Clostridium oroticum | M59109.1 | 94 | 367 | 389 | |||
| Ruminococcus torques | L76604.1 | 93 | 365 | 389 | |||
| 60.1 | 518R (V3) |
139 | Uncultured bacterium | EF403112.1 | 100 | 124 | 124 |
| Ruminococcus productus | AY937379.1 | 98 | 122 | 124 | |||
| Clostridium sp. | Y10584.1 | 98 | 122 | 124 | |||
| Ruminococcus hansenii | M59114.1 | 97 | 121 | 124 | |||
| 45.9 | Bfra 531F | 241 | Bacteroides fragilis | DQ100447.1 | 99 | 210 | 211 |
| Bacteroides finegoldii | AB222700.1 | 98 | 207 | 211 | |||
| Bacteroides thetaiotaomicron | AY319392.1 | 97 | 206 | 211 | |||