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. 2011 Apr 19;6(4):e18348. doi: 10.1371/journal.pone.0018348

Table 3. Variants observed at the mtDNA tRNA genes of Ras/MAPK pathway syndromes patients.

Mutation position Sample ID1 Nucleotide change tRNA Location in secondary structure Hg MITOMAP Conservation2
4336 #13, #14 T-C tRNA-Gln Acceptor stem H5a, U6d ADPD/hearing loss & migraine (unclear) 50%<x<90%
7476 #4* C-T tRNA-SerUCN Anticodon stem J2 Not reported 50%<x<90%
7521 #44, #45* G-A tRNA-Asp Acceptor stem L3′4′6, G4, M76 Not reported Different in human and mammalian consensus
7561 #39* T-C tRNA-Asp Variable loop - Not reported 90%<x<100%
10463 #5*, #6 T-C tRNA-Arg Acceptor stem T, J1c1b1a, P4a Not reported 50%<x<90%
122853 #45* T-G tRNA-LeuCUN DHU loop L2a5 Not reported 50%<x<90%
12308 #33*, #34; #35, #36, #37*, #38*, #39*, #40 A-G tRNA-LeuCUN Variable loop U CPEO/stroke/CM/renal & prostate cancer risk/altered brain pH 100%
15904 #17, #18, #19 C-T tRNA-Thr DHU loop HV0a Not reported Natural variable site
15927 #43 G-A tRNA-Thr Anticodon stem X2b, B5b, U6a5, L0f2b, G3b, HV1a1 Multiple sclerosis/DEAF1555 increased penetrance (P.M/possible helper mutation) Different in human and mammalian consensus
15928 #5*, #6 G-A tRNA-Thr Anticodon stem T, L3x2b, C7b, Z3a, M25, M35b Multiple sclerosis (P.M) 50%<x<90%

NOTE.

1

Starst identified samples carrying nDNA mutations;

2

According to Helm et al. [57];

3

Transversion 12285T>G is not actually a private variant if we consider that a new branch, L2a5, has been defined in the present article based on this entire genome and another one previously described in the literature under the GenBank entry HM596745.