Table 1. Diffraction data and refinement statistics.
Values in parentheses are for the highest resolution shell.
| Native form | Iron-soaked form | |||
|---|---|---|---|---|
| Crystal parameters | ||||
| Space group | P212121 | P212121 | ||
| Unit-cell parameters () | a = 94.7, b = 98.4, c = 208.9 | a = 94.5, b = 98.0, c = 208.4 | ||
| Solvent content (%) | 43.7 | 43.2 | ||
| Matthews coefficient (3Da1) | 2.18 | 2.16 | ||
| No. of molecules in asymmetric unit | 12 | 12 | ||
| Data collection | ||||
| X-ray wavelength () | 1.0000 | 1.0000 | 1.7400 | 1.7500 |
| Resolution () | 50.01.25 (1.271.25) | 50.01.30 (1.321.30) | 30.02.00 (2.032.00) | 30.02.00 (2.032.00) |
| I/(I) | 18.6 (3.43) | 17.8 (2.40) | 18.9 (5.60) | 20.0 (6.24) |
| No. of observed reflections | 2854420 | 1768328 | 424197 | 422495 |
| No. of unique reflections | 531051 | 428932 | 117185 | 116841 |
| Completeness (%) | 99.7 (99.9) | 90.9 (89.6) | 88.7 (83.4) | 88.6 (83.2) |
| Multiplicity | 5.4 (4.7) | 4.1 (2.8) | 3.6 (3.6) | 3.6 (3.7) |
| R merge † | 0.075 (0.557) | 0.061 (0.396) | 0.054 (0.204) | 0.042 (0.176) |
| Refinement | ||||
| No. of used reflections | 504240 | 407378 | ||
| R work ‡/R free § | 0.164/0.205 | 0.153/0.173 | ||
| Mean temperature factor (2) | 18.4 | 25.2 | ||
| Model composition | ||||
| No. of amino acids | 1839 | 1835 | ||
| No. of non-H atoms | 16660 | 16201 | ||
| No. of iron ions | 0 | 12 | ||
| No. of magnesium ions | 6 | 4 | ||
| No. of sulfate ions | 6 | 6 | ||
| No. of water molecules | 1644 | 1327 | ||
| Geometry | ||||
| R.m.s.d. bond lengths () | 0.022 | 0.022 | ||
| R.m.s.d. bond angles () | 1.95 | 1.95 | ||
| Ramachandran plot, residues in | ||||
| Favoured region (%) | 99.1 | 99.3 | ||
| Allowed region (%) | 0.9 | 0.7 | ||
| Outlier region (%) | 0.0 | 0.0 | ||
R
merge =
, where Ii(hkl) is the intensity measured for a given reflection and I(hkl) is the average intensity for multiple measurements of this reflection.
R
work =
, where F
obs and F
calc are the observed and calculated structure-factor amplitudes, respectively, for 95% of the reflection data used in the refinement.
R
free =
for 5% of the reflection data that were excluded during refinement.