Table 1.

Genotype association results using UNPHASED for multiallelic markers and PLINK for dichotomous markers

Marker	Allele	Frequency	T	NT	χ2	P value
RS3	305	0.001	0	1	1.00	0.32
	311	0.005	2	1	0.33	0.56
	319	0.001	0	1	1.00	0.32
	321	0.008	3	1	1.00	0.32
	323	0.058	19	16	0.26	0.61
	325	0.102	31	24	0.89	0.35
	327	0.214	45	36	1.00	0.32
	329	0.210	43	54	1.25	0.26
	331	0.099	25	26	0.02	0.89
	333	0.167	44	42	0.05	0.83
	335	0.026	6	11	1.47	0.23
	337	0.014	4	2	0.67	0.41
	339	0.059	14	20	1.06	0.30
	341	0.015	4	5	0.11	0.74
	343	0.017	5	6	0.09	0.76
	345	0.004	2	1	0.33	0.56
	Short	0.390	86	65	2.92	0.09
RS11174815	A	0.015	0	7	7.00	0.008a 0
RS1	302	0.004	0	3	3.00	0.08
	306	0.161	39	31	0.91	0.34
	310	0.448	67	52	1.89	0.17
	314	0.193	33	46	2.14	0.14
	318	0.079	20	26	0.78	0.38
	322	0.096	24	30	0.67	0.41
	330	0.014	5	1	2.67	0.10
	334	0.005	2	1	0.33	0.56
	Short	0.518	78	54	4.36	0.036b
RS3741865	T	0.008	2	1	0.33	0.56
RS1042615	T	0.436	55	58	0.08	0.78
AVR	204	0.002	1	0	1.00	0.32
	208	0.010	2	0	2.00	0.16
	210	0.108	16	21	0.68	0.41
	212	0.272	43	41	0.05	0.83
	214	0.461	51	48	0.09	0.76
	216	0.040	10	10	0.00	1.00
	218	0.006	0	1	1.00	0.32
	220	0.064	10	11	0.05	0.83
	222	0.001	0	1	1.00	0.32
	Short	0.411	79	79	0.00	1.00
RS3803107	T	0.178	32	30	0.06	0.79

T = transmitted, NT = non-transmitted.

Associations at the suggestive α level 0.05 are shown in bold text.

^aEmpirical P = 0.01. ^bEmpirical P = 0.08.