Table 1.
Genes encoding TFs with significant differences in expression between the periphery and the interior of a colony
| TF | Family | Tip/interior* | Growth (mm day−1)† | Annotation |
|---|---|---|---|---|
| NCU00749 | BHLH | 2.0 | 60–65 | Predicted protein |
| NCU04731 | BHLH | 1.9 | 65–70 | sah-2, short aerial hyphae-2 |
| NCU02724 | BHLH | 1.6 | 70–75 | Helix–loop–helix DNA-binding domain |
| NCU00499 | bZIP | 1.6 | 25–30 | ada-1, all development altered-1 |
| NCU01459 | bZIP | 0.6 | asl-2, ascospore lethal-2 | |
| NCU00090 | C2H2 | 6.0 | 60–65 | Related to PacC protein |
| NCU00340 | C2H2 | 3.5 | 20–30 | pp-1, Ste12-like TF |
| NCU00694 | C2H2 | 3.0 | 70–75 | Putative protein |
| NCU02671 | C2H2 | 2.4 | 20–25 | Cutinase G-box binding protein |
| NCU03043 | C2H2 | 2.0 | 60–65 | Related to Krüppel protein |
| NCU03421 | C2H2 | 7.7 | 60–65 | Conserved hypothetical protein |
| NCU03699 | C2H2 | 2.4 | 70–75 | Conserved hypothetical protein |
| NCU06487 | C2H2 | 2.1 | 75–80 | Predicted protein |
| NCU06907 | C2H2 | 1.8 | 70–75 | Conserved hypothetical protein |
| NCU06503 | C2H2 | 1.8 | 55–60 | Related to DNA-binding protein |
| NCU08807 | C2H2 | 1.7 | cre-1, carbon repressor protein 1 | |
| NCU09252 | C2H2 | 1.5 | 75–80 | Conserved hypothetical protein |
| NCU01154 | GATA | 2.3 | sub1, submerged protoperithecia-1 | |
| NCU09068 | GATA | 2.3 | 60–65 | Conserved hypothetical protein |
| NCU05685 | Myb | 1.6 | Conserved hypothetical protein | |
| NCU00155 | Zn2Cys6 | 2.0 | 70–75 | Transcriptional activator Mut3p |
| NCU00289 | Zn2Cys6 | 2.5 | 65–70 | tah-1, tall aerial hyphae-1 |
| NCU01097 | Zn2Cys6 | 3.6 | 70–75 | Related to NITA protein |
| NCU04866 | Zn2Cys6 | 2.0 | 50–55 | Related to FacB DNA-binding protein |
| NCU06799 | Zn2Cys6 | 3.0 | 60–65 | Hypothetical protein |
| NCU07139 | Zn2Cys6 | 5.0 | 80–85 | Conserved hypothetical protein |
| NCU07788 | Zn2Cys6 | 2.7 | 55–60 | col-26, colonial-26 |
| NCU08063 | Zn2Cys6 | 2.1 | 65–70 | Putative protein |
| NCU08307 | Zn2Cys6 | 3.0 | Hypothetical protein | |
| NCU02576 | Zn2Cys6 | 1.9 | Related to cutinase TF | |
| NCU07392 | Zn2Cys6 | 1.5 | 60–65 | adv-1, all development altered |
| NCU06407 | Zn2Cys6 | 1.5 | 55–60 | vad-3, vegetative asexual development-3 |
| NCU02307 | Zn2Cys6 | 1.5 | 70–75 | Conserved hypothetical protein |
| NCU08726 | Zn2Cys6 | 0.2 | 20–25 | fl, conidial development protein fluffy |
| NCU03593 | 1.7 | 10–15 | Probable homeoprotein |
*Significance cut-off (bagel) of at least 1.5-fold.
†Growth data from the Broad Institute (http://www.broadinstitute.org/annotation/genome/neurospora/MultiHome.html).