Table 1. Summary of common CNVRs (Freq.>5%).
CNV region | Length (kb) | No. of CNVs | CNV Frequency* | No. of genes | Gene | Overlapping with DGV** |
chr18:64835114–64906488 | 71.4 | 169 | 0.219 | 1 | CCDC102B | YES |
chr19:20368239–20528316 | 160.1 | 145 | 0.188 | 2 | ZNF737,ZNF826 | YES |
chr4:162050188–162154792 | 104.6 | 137 | 0.178 | 0 | YES | |
chr14:43524894–43690442 | 165.5 | 99 | 0.128 | 0 | YES | |
chr18:3559620–3561217 | 1.6 | 88 | 0.114 | 1 | DLGAP1 | YES |
chr8:4905758–5947152 | 1041.4 | 84 | 0.109 | 0 | YES | |
chr15:45994758–45999227 | 4.5 | 79 | 0.102 | 0 | YES | |
chr11:5828407–5911385 | 83.0 | 66 | 0.086 | 2 | OR52E4,OR52E8 | YES |
chr21:16693940–16716168 | 22.2 | 57 | 0.074 | 1 | C21orf34 | YES |
chr8:15447669–15471819 | 24.2 | 54 | 0.070 | 1 | TUSC3 | YES |
chr22:20352005–21702142 | 1350.1 | 52 | 0.067 | 13 | GGTLC2,LOC648691,LOC96610,MAPK1,POM121L1P,PPIL2,PPM1F,PRAME,TOP3B,VPREB1,YPEL1,ZNF280A,ZNF280B | YES |
chr4:153203765–153212191 | 8.4 | 50 | 0.065 | 0 | YES | |
chr3:65166887–65187636 | 20.7 | 48 | 0.062 | 0 | YES | |
chr6:31463297–31572718 | 109.4 | 48 | 0.062 | 3 | HCG26,HCP5,MICA | YES |
chr12:130289496–130380887 | 91.4 | 47 | 0.061 | 0 | YES | |
chr9:11743695–12194748 | 451.1 | 46 | 0.060 | 0 | YES | |
chr10:90934639–90935788 | 1.1 | 44 | 0.057 | 0 | YES | |
chr12:7861988–8017012 | 155.0 | 44 | 0.057 | 2 | SLC2A14,SLC2A3 | YES |
chr8:145028388–145358471 | 330.1 | 42 | 0.054 | 13 | C8orf30A,CYC1,EXOSC4,GPAA1,GRINA,HEATR7A,KIAA1875,MAF1,OPLAH,PARP10,PLEC1,SHARPIN,SPATC1 | YES |
chr5:32137157–32205304 | 68.1 | 40 | 0.052 | 2 | GOLPH3,PDZD2 | YES |
chr5:41251228–41270765 | 19.5 | 40 | 0.052 | 1 | C6 | YES |
*The CNV frequencies were obtained by number of total identified CNVs/number of total subjects.
**Database of genomic variants (http://projects.tcag.ca/variation).