Table 3. Forty mapped genes with most highly expressed SAGE tags in the three HTM libraries (After the removal of ribosomal proteins).
| Tag | Tag counts (%†) | # of libraries | Unigene ID | Gene symbol | Gene description | Location |
|---|---|---|---|---|---|---|
| TTCATACACCTATCCCC |
3511 (1.17) |
3 |
Hs.703108 |
Transcribed locus |
||
| CCCTACCCTGTTACCTT |
1594 (0.53) |
3 |
Hs.522555 |
APOD |
Apolipoprotein D |
3q26.2-qter |
| CACCTAATTGGAAGCGC |
1254 (0.42) |
3 |
Hs.150324 |
LOC100133315 |
Similar to hCG1640299 |
11q13.4 |
| TGATTTCACTTCCACTC |
1143 (0.38) |
3 |
Hs.634715 |
Transcribed locus |
||
| GCCCCTGCTGACACGAG |
1090 (0.36) |
3 |
Hs.433845 |
KRT5 |
Keratin 5 |
12q12-q13 |
| CAACTAATTCAATAAAA |
990 (0.33) |
3 |
Hs.436657 |
CLU |
Clusterin |
8p21-p12 |
| TACCTGCAGAATAATAA |
977 (0.33) |
3 |
Hs.416073 |
S100A8 |
S100 calcium binding protein A8 |
1q21 |
| GTTGTGGTTAATCTGGT |
775 (0.26) |
3 |
Hs.534255 |
B2M |
Beta-2-microglobulin |
15q21-q22.2 |
| GTGGCCACGGCCACAGC |
721 (0.24) |
3 |
Hs.112405 |
S100A9 |
S100 calcium binding protein A9 |
1q21 |
| GGAGTGTGCTCAGGAGT |
717 (0.24) |
3 |
Hs.504687 |
MYL9 |
Myosin, light chain 9, regulatory |
20q11.23 |
| ACTTTTTCAAAAAAAAA |
648 (0.22) |
3 |
Hs.349570 |
NCRNA00182 |
Non-protein coding RNA 182 |
Xq13.2 |
| CACTACTCACCAGACGC |
612 (0.20) |
3 |
Hs.631491 |
Transcribed locus |
||
| TACCATCAATAAAGTAC |
605 (0.20) |
3 |
Hs.544577 |
GAPDH |
Glyceraldehyde-3-phosphate dehydrogenase |
12p13 |
| ACCCTTGGCCATAATAT |
555 (0.19) |
3 |
Hs.465808 |
HNRNPM |
Heterogeneous nuclear ribonucleoprotein M |
19p13.3-p13.2 |
| TACATAATTACTAATCA |
520 (0.17) |
3 |
Hs.523789 |
NEAT1 |
Nuclear paraspeckle assembly transcript 1 (non-protein coding) |
11q13.1 |
| ACTAACACCCTTAATTC |
491 (0.16) |
3 |
Hs.631494 |
LOC100131754 |
Similar to NADH dehydrogenase subunit 2 |
1p36.33 |
| GTAGGGGTAAAAGGAGG |
451 (0.15) |
3 |
Hs.631492 |
Transcribed locus |
||
| TGCCTGCACCAGGAGAC |
422 (0.14) |
3 |
Hs.304682 |
CST3 |
Cystatin C |
20p11.21 |
| TAATAAAGAATTACTTT |
407 (0.14) |
3 |
Hs.654570 |
KRT15 |
Keratin 15 |
17q21.2 |
| GAAATACAGTTGTTGGC |
388 (0.13) |
3 |
Hs.654447 |
CTSD |
Cathepsin D |
11p15.5 |
| CAAGCATCCCCGTTCCA |
375 (0.13) |
2* |
Hs.408470 |
Transcribed locus |
||
| TACAGTATGTTCAAAGT |
370 (0.12) |
3 |
Hs.518525 |
GLUL |
Glutamate-ammonia ligase (glutamine synthetase) |
1q31 |
| CATATCATTAAACAAAT |
360 (0.12) |
3 |
Hs.479808 |
IGFBP7 |
Insulin-like growth factor binding protein 7 |
4q12 |
| ACACAGCAAGACGAGAA |
343 (0.11) |
3 |
Hs.721789 |
Transcribed locus |
||
| ATTTGAGAAGCCTTCGC |
336 (0.11) |
3 |
Hs.703130 |
Transcribed locus |
||
| CCACAGGAGAATTCGGG |
325 (0.11) |
3 |
Hs.201446 |
PERP |
PERP, TP53 apoptosis effector |
6q24 |
| GTGCTGAATGGCTGAGG |
323 (0.11) |
3 |
Hs.632717 |
MYL6 |
Myosin, light chain 6, alkali, smooth muscle and non-muscle |
12q13.2 |
| GTGTGTTTGTAATAATA |
296 (0.10) |
3 |
Hs.369397 |
TGFBI |
Transforming growth factor, beta-induced, 68 kDa |
5q31 |
| CAGGTTTCATATTCTTT |
230 (0.08) |
3 |
Hs.483444 |
CXCL14 |
Chemokine (C-X-C motif) ligand 14 |
5q31 |
| ACGGAACAATAGGACTC |
226 (0.08) |
3 |
Hs.446429 |
PTGDS |
Prostaglandin D2 synthase 21 kDa (brain) |
9q34.2-q34.3 |
| GATGCCGGCACAAAACT |
223 (0.07) |
3 |
Hs.146559 |
ANGPTL7 |
Angiopoietin-like 7 |
1p36.3-p36.2 |
| CCCCCTGGATCAGGCCA |
223 (0.07) |
3 |
Hs.275243 |
S100A6 |
S100 calcium binding protein A6 |
1q21 |
| GATGTGCACGATGGCAA |
219 (0.07) |
3 |
Hs.654380 |
KRT14 |
Keratin 14 |
17q12-q21 |
| TAAGTAGCAAACAGGGC |
214 (0.07) |
3 |
Hs.643683 |
ITM2B |
Integral membrane protein 2B |
13q14.3 |
| TCGAAGCCCCCATCGCT |
211 (0.07) |
3 |
Hs.631498 |
LOC100293090 |
Similar to DC24 |
|
| GTGACCTCCTTGGGGGT |
210 (0.07) |
3 |
Hs.433901 |
COX8A |
Cytochrome c oxidase subunit 8A (ubiquitous) |
11q12-q13 |
| CTAGCCTCACGAAACTG |
205 (0.07) |
3 |
Hs.514581 |
ACTG1 |
Actin, gamma 1 |
17q25 |
| CCCTGGGTTCTGCCCGC |
205 (0.07) |
3 |
Hs.433670 |
FTL |
Ferritin, light polypeptide |
19q13.33 |
| GACCAGCTGGCCAAGAC |
201 (0.07) |
3 |
Hs.642660 |
C10orf116 |
Chromosome 10 open reading frame 116 |
10q23.2 |
| GTTACCACAAGCCACAA | 200 (0.07) | 3 | Hs.436037 | MYOC | Myocilin, trabecular meshwork inducible glucocorticoid response | 1q23-q24 |
†The percentage was based on the total number of tags in all three libraries (298834). * This 17 bp tag was not expressed in the library #625.