Table 1.
ARF gene family in Maize
| Gene Namea |
ORF length (bp)b |
Deduced polypeptidec | Chr. Locusd | Genomic Locuse | ESTg | Physical Blockh |
Block Pairsi | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Length (aa) | MW (kDa) | PI | BAC |
GenBank Accessions, DNA |
Nearest Markerf |
||||||
| ZmARF1 | 3261 | 1086 | 120.15 | 6.25 | 1.06 | AC208531 | HM004516 | bnlg1057 | CO533792 | ||
| ZmARF2 | 2046 | 681 | 74.53 | 7.93 | 1.08 | AC194848 | HM004517 | umc1096 | BT060467 | 45-49 | 10La |
| ZmARF3 | 2451 | 816 | 90.85 | 6.38 | 2.01 | AC191413 | HM004518 | umc2046 | AY110452 | 68-82 | 4L |
| ZmARF4 | 2808 | 935 | 102.78 | 6.12 | 2.01 | AC204518 | HM004519 | umc1622 | EE039613 | 68-82 | 4L |
| ZmARF5 | 1542 | 513 | 55.44 | 6.40 | 2.03 | AC200303 | HM004520 | umc1021 | BT066632 | 68-82 | 4L |
| ZmARF6 | 1974 | 657 | 72.94 | 6.14 | 2.04 | AC190503 | HM004521 | umc1089 | BT067327 | ||
| ZmARF7 | 2061 | 686 | 76.70 | 6.29 | 3.00 | AC190684 | HM004522 | bnlg108 | EC885481 | ||
| ZmARF8 | 2124 | 707 | 75.35 | 7.10 | 3.01 | AC184124 | HM004523 | phi049 | EU965402 | ||
| ZmARF9 | 2646 | 881 | 97.03 | 6.01 | 3.04 | AC193407 | HM004524 | AI881370 | EE037883 | ||
| ZmARF10 | 2400 | 799 | 89.22 | 6.25 | 3.06 | AC193433 | HM004525 | bnlg1176 | BT055015 | 125-151 | 1L |
| ZmARF11 | 2067 | 688 | 74.98 | 7.28 | 3.07 | AC210193 | HM004526 | pco114882 | DR820421 | 125-151 | 1L |
| ZmARF12 | 2127 | 708 | 77.95 | 7.11 | 3.08 | AC202124 | HM004527 | umc1690 | EU947189 | ||
| ZmARF13 | 2553 | 850 | 93.13 | 7.01 | 4.03 | AC197426 | HM004528 | umc2199 | BT069005 | ||
| ZmARF14 | 2019 | 672 | 74.84 | 6.25 | 4.05 | AC208514 | HM004529 | umc1103 | EE174911 | ||
| ZmARF15 | 2136 | 711 | 75.93 | 7.23 | 4.06 | AC205511 | HM004530 | bnlg1755 | BT087991 | ||
| ZmARF16 | 2718 | 905 | 100.23 | 6.10 | 4.09 | AC195460 | HM004531 | umc1143 | EU955385 | ||
| ZmARF17 | 1935 | 644 | 70.95 | 6.97 | 5.03 | AC184866 | HM004532 | umc2352 | BT066347 | 212-219 | 10La |
| ZmARF18 | 2742 | 913 | 100.89 | 6.54 | 5.03 | AC196992 | HM004533 | umc1315 | EE176799 | ||
| ZmARF19 | 2151 | 716 | 77.51 | 7.14 | 5.03 | AC207656 | HM004534 | umc1610 | AY105182 | ||
| ZmARF20 | 3450 | 1149 | 127.47 | 6.17 | 5.03 | AC194218 | HM004535 | umc1154 | EE290325 | ||
| ZmARF21 | 2097 | 698 | 74.99 | 8.26 | 6. 02 | AC197562 | HM004536 | umc1656 | BT083638 | ||
| ZmARF22 | 2778 | 925 | 102.23 | 6.44 | 6. 02 | AC195867 | HM004537 | bnlg2151 | CA272068 | ||
| ZmARF23 | 2043 | 680 | 73.94 | 6.86 | 6. 06 | AC187896 | HM004538 | umc1103 | BT067427 | ||
| ZmARF24 | 2211 | 736 | 80.45 | 7.84 | 6. 07 | AC204859 | HM004539 | umc1350 | AY109838 | ||
| ZmARF25 | 2406 | 801 | 89.75 | 6.47 | 8.06 | AC203318 | HM004540 | umc1161 | BT067605 | 324-366 | 1L |
| ZmARF26 | 2061 | 686 | 74.34 | 7.10 | 8.09 | AC208613 | HM004541 | umc1638 | BT087971 | 324-366 | 1L |
| ZmARF27 | 3162 | 1053 | 116.73 | 6.67 | 9.01 | AC211017 | HM004542 | umc2335 | CD439516 | ||
| ZmARF28 | 2442 | 813 | 89.69 | 7.14 | 10.03 | AC190927 | HM004543 | umc1863 | BT066544 | ||
| ZmARF29 | 2838 | 945 | 103.82 | 6.31 | 10.07 | AC201888 | HM004544 | pco137895 | CO441386 | 411-420 | 4L |
| ZmARF30 | 2430 | 809 | 90.30 | 6.24 | 10.07 | AC200880 | HM004545 | pco137999 | EC901065 | 411-420 | 4L |
| ZmARF31 | 1389 | 462 | 50.55 | 5.41 | 10.07 | AC190828 | HM004546 | umc1038 | BT067850 | 411-420 | 4L |
a Systematic designation given to maize ARFs in this work.
b Length of open reading frame in base pairs.
c The number of amino acids, molecular weight (kilodaltons), and isoelectric point (pI) of the deduced polypeptides.
d Location of the ZmARF genes to the Chromosome bins.
e BAC name, DNA accession number where the ZmARF gene is present.
f Nearest marker to the ZmARF gene.
g Representative EST/cDNA in GenBank corresponding to ZmARF gene.
h Location of the ZmARF genes to the physical blocks [32].
I Location of the ZmARF genes to the block pairs [32]. Six ZmARF sister pairs are mapped on the same duplicated chromosomal blocks: ZmARF2 and 17 in 10La, ZmARF3 and 30 in 4L, ZmARF4 and 29 in 4L, ZmARF5 and 31 in 4L, ZmARF10 and 25 in 1L, ZmARF11 and 26 in 1L.