. 2011 Apr 26;6(4):e18673. doi: 10.1371/journal.pone.0018673

Table 2. Putative virulence genes associated with complicated infections.

				Clinical Outcome
Common Gene Name	Locus	Source Strain	Sum Hits^a	Array P-value For Association^b	PCR P-value For Association^c	P-value After Adjust for MRSA^d	Simple Agreement
transposase/integrase	VRA0002	Michigan-VRSA	13	0.0008	0.0007	0.5604	0.927^*
transposase/integrase	SA1483	N315	3	0.0004	<0.0001	0.0332	0.899^*
thymidylate synthase	VRA0005	Michigan-VRSA	1	0.0147	0.152	0.6199	0.89^*
hypothetical phage protein	SAS0928	MSSA476	1	0.0127	0.0018	0.2105	0.99^*
prophage amidase/cell wall autolysin	SA0389	COL	2	0.0112	0.0019	0.4321	0.867^*
conserved hypothetical protein	SA0329	COL	1	0.0205	0.1916	0.4568	0.838^*
hypothetical phage protein	SAR1546	MRSA252	2	0.0227	0.0001	0.0261	0.581
hypothetical phage protein	SAR1502	MRSA252	1	0.0131	0.0019	0.1661	0.768^*
prophage amidase/cell wall autolysin	MW1380	MW2	2	0.0124	0.0029	0.2461	0.853^*
phage regulatory protein	SAR1522	MRSA252	4	0.002	n.d.	n.d.	n.d.
hypothetical protein	MW1385	MW2	2	0.0022	0.0011	0.1764	0.994^*
conserved hypothetical protein	SA0338	COL	1	0.0085	<0.0001	0.0132	0.988^*
hypothetical protein	SA0397	N315	3	0.0049	0.0219	0.4199	0.755^*
putative regulatory protein	SAR1555	MRSA252	1	0.0146	0.0079	0.7332	0.908^*

^(a)Sum Hits: the number of times this probe hybridized to a part of the sequenced genomes.

^(b)P-value for clinical association from aCGH results.

^(c)P-value for clinical association from PCR validation.

^(d)P-value for gene association with sick outcome after adjusting for MRSA status.

*Value greater than 0.60 indicates PCR results are in simple aggrement with a CGH results.