Table 2.
Transcription factors and miRNAs showing enrichment and potentially contributing to expression responses in the indicated gene classes and TFS groups.
| Class | TFS group | Motif name | miRNA name |
|---|---|---|---|
| I | 9.1001 | MEF2A | - |
| 9.2002 | FOXO, LEF1, STAT5B, POU1F1, NFAT, TLX-2, GATA-1, STAT5a, MAZ, IRF-7, TAF, FOXF2, JUN, FOXA1, FOXJ1, ZHX2 | MIR-23B, MIR-144, MIR-142 | |
| 6.0110 | MEF2A | - | |
| 15.2112 | TGIF | - | |
| IIa | 8.0002 | E2F, TCF3, ETS-2, PAX4 | - |
| IIb | 4.0010 | MEF2A | - |
| 4.0020 | HOXA4, GCM1, RFX1, GATA3 | MIR-24 | |
| 13.2022 | TAF | - | |
| IIc | 12.0022 | TCF8, FOXO, TAF | MIR-524 |
| IIIa | 1.1000 | STAT5B, STAT5A, PGR, LEF1, TCF3, FOXF2, E4F1 | MIR-124A, MIR-17-5P, MIR-20A, MIR-106A, MIR-106B, MIR-20B, MIR-519D", MIR-182, MIR-200B, MIR-200C, MIR-429, MIR-202, MIR-199A, MIR-519E, MIR-9 |
| IIIb | 2.0100 | MYCN, OLF1, MYOD1 | - |
| 2.0200 | - | MIR-493 | |
| - | 11.1101 | LEF1 | - |
Motifs and miRNAs within each TFS group are listed in order of decreasing enrichment p-value, based on data provided in Additional file 3, Table S3B.