Table 2.
Summary of BES mapping
| Number of BAC clones | Number of BES | ||
|---|---|---|---|
| Mate-pairs | 29,046 | ||
| Mapped | 26,809 | 38,736 | |
| Paired endsa | 3,133 | 6,266 | |
| Long BES pairsb | 3,182 | 6,364 | |
| mate-reversec | 267 | 534 | |
| Unmated | 5,345 | 10,690 | |
| Singletone | 14,882 | 14,882 | |
| Unmapped | 2,237 | 4,474 | |
a. Two ends (≤ 300 kb apart) derived from the same BAC clone were mapped to the same chromosome with the same orientation.
b. Two BES (>300 kb apart) in one BAC located in the same chromosome with the same orientation.
c. Two BES in one BAC located in the same chromosome with the different orientation.
d. Two ends from the same BAC were mapped to different chromosomes.
e. Only one end in carp BAC was aligned to zebrafish chromosome.