Table 1.

Copy Number Calls at Invariant Regions of the Genome

Region	Partek	GTCa	Birdsuite	qPCR
2:240,032,088	28/0b	28/0	28/0	24/4
3:180,366,781	27/0	27/0	27/0	27/0
6:326,964	5/0	5/0	5/0	5/0
7:11,288,419	17/0	17/0	17/0	17/0
7:24,002,710	24/0	24/0	24/0	24/0
8:51,195,001	8/0	8/0	6/2	6/2
9:16,930,899	25/0	24/1	25/0	25/0
13:53,784,055	9/0	9/0	9/0	9/0
13:56,713,547	9/0	9/0	9/0	9/0
15:32,555,299	8/0	8/0	8/0	8/0
16:3,104,308	9/0	9/0	9/0	9/0
16:4,280,824	8/0	8/0	8/0	8/0
16:18,557,305	9/0	9/0	9/0	9/0
20:28,068,523	6/0	6/0	6/0	6/0
20:29,271,114	8/0	8/0	8/0	8/0
22:47,400,722	16/0	16/0	16/0	16/0

^aGTC = Genotyping Console 2.0

^bValues are represented as "CN = 2"/"CN = non 2"