Table 1. Binding free energies (ΔG) for hPS-CT 4 complexes.
Site of hPS binding | MD run* | Reference protein groups** | ΔG ***, kcal/mol |
M2 | randM2 | Y11,F25,C42 | −8.4±0.6 |
K12,F25,C38 | −7.2±0.2 | ||
Y11,M24,I39 | −6.8±1.0 | ||
M1 | randM1 | C3,M24,C42 | −6.2±1.1 |
N4,K23,M26 | −6.1±0.5 | ||
N4,K23,M26 | −5.7±0.4 | ||
L3 | randL3 | F25,V41,C54 | −5.0±0.4 |
Y22,F25,C42 | −4.3±0.4 | ||
K23,C42,V49 | −3.8±0.5 | ||
P1 | randP1 | C3,K35,K50 | −3.8±0.6 |
Y11,F25,C42 | −3.9±0.5 |
*Starting hPS-CT 4 complexes were taken from the last 5 ns of 15-ns MD trajectories.
**defining the pathway from the complex to unbound hPS and CT 4 in calculations of PMF.
***Mean ± SEs are shown.